Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0960 ATGAAGCCTCAAGCTGCTCAGACCGATCTCAGCTCTCTCAAACGCTCCCCGCCTTCAACCATCTCTTCTTCTTCCTCTTCTCTCGTCACCACCCTTGTTGATCATATCAATAACCCTTCACACCCTCCTCCTCGTTTTCCTGAGATAAACCTCAAAACTCCTATGGTTAGGCCTTACGTTCGATCCAAAATGCCCAGGCTTCGTTGGACACCAGATCTCCATCGCTGCTTCGTGCATGCAGTTCAGAGACTTGGAGGAGAAGACAGGGCCACACCAAAGTTGGTCTTACAGATAATGAATGTAAAGGGGCTTACCATAGCTCATGTCAAAAGCCACCTTCAGATGTACAGGAGCATGAAGCAGGAGCAGAAGAGTGAAGGTACAAAGAAGAAGGCAGTGGCTCCGGAGTTTCTAGCCTCCACATTCTCAACTCTTGGCTCAAGATACACCCAACAGAATCCTCACCAAAGAACCTGCACGGAACAGCTTCTTCCCACCCATGCTCAACGGAATGATTGTGAGAGTGGAAAGCATGGGGGTAAATCGATTAATGAAGAGAAGATGAAGTCCTACATCATCTTCGAGGGTCTTCTGAGTGACCAGACTGTCCAAGAGAATAAAATTGGTCCTGAAAAGGTGTCATTATGGGGTGACACCGGATACCAAAGCGACCGTGAAAGATTCCATGACAGAATTGCTGCTGCCATCGGAGGAGGAGAGATAATGTGTGAGACCACACTGTCCTTATCAATGACCTCCAGGGCTACTTCACATTCATTCTTCAATCGCAGCCACTCCGGTCCAGATGCTAATGATGTCTCTCTTGAGCTCACGCTCGCTTAG 843 0.4828 MKPQAAQTDLSSLKRSPPSTISSSSSSLVTTLVDHINNPSHPPPRFPEINLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQIMNVKGLTIAHVKSHLQMYRSMKQEQKSEGTKKKAVAPEFLASTFSTLGSRYTQQNPHQRTCTEQLLPTHAQRNDCESGKHGGKSINEEKMKSYIIFEGLLSDQTVQENKIGPEKVSLWGDTGYQSDRERFHDRIAAAIGGGEIMCETTLSLSMTSRATSHSFFNRSHSGPDANDVSLELTLA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0960 280 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 31 218 - -
Vra10g0960 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 121 IPR017930 -
Vra10g0960 280 MobiDBLite consensus disorder prediction 1 26 - -
Vra10g0960 280 Pfam Myb-like DNA-binding domain 67 117 IPR001005 -
Vra10g0960 280 SUPERFAMILY Homeodomain-like 63 120 IPR009057 -
Vra10g0960 280 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 65 119 IPR006447 GO:0003677
Vra10g0960 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 31 218 IPR044848 GO:0003700
Vra10g0960 280 Gene3D - 64 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0960 Vra-Chr10 15390035 15392738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0960 56 125 G2-like Transcription Factor Family AT2G42660 78.571 2.73e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra10g0960 Myb_DNA-binding 5.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0960 - - pvu:PHAVU_006G149000g 392.119