Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0952 ATGGACTGGACTCGAGGCCACATGCTCGGCCGTGGTTCCACCGCGGCCGTCTACATCGCCGAGTCCCGCCGATCCGGTCAAGTCTTTGCCGTCAAGTCGGCAGAGCTACACCGGTCGGAATTCCTCCAAAGGGAGGAGATGATTCTTTCCACTCTCAAGTGTCCTCATATTGTTGCGTACCAAGGTTTTGACACCACGTTTGAGAACGGTGTTTACTGGTTCAACATGTTCATGGAATACGCGCCTCACGGGACGCTGGCAGAGCGCGGTGGTGGCATGGACGAAGCGGTGGTGGGATCCTATACCCGCCAAATTCTGCAGGGGCTGCACTACCTCCACTCCAGTGGGATAGTGCATTGCGACGTGAAGGGGCAGAATGTGTTGGTGACGGAGAAGGGAGTGAAAATTGCGGACTTGGGCTGTGCTCGGAGGGTGGGGGAGGTGTCGGTCATCGCCGGCACGCCGGCGTTCATGTCTCCTGAGGTAGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTCTGGGGTGCACAGTGCTGGAGATGATCACCGGGAAGCCACCGTGGCACGGCGGCGGAGACCCGGCGGGAGTGGTTTACAGGATCGGATTCTCCGATGAGTTGCCTGAGATTCCTAGCTGTGTGTCAGAGCAGGGGAGGGACTTTTTGGGAAAGTGTTTGAGGAGGGACCCGAATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAATGCACGGAATTGAAGTTGCTTTTGTTGGATTCAGACACTCCCACTGGTGTGTTGGAACGAGGATTTTGGGATTCCTTGGAGACAACCGAGCATGGAGCACGTGATTGTCCCTCTCCTACGGACAGAATTCGTAGTTTGTTTTCGGATGAACCCCTTTGGGTATGGAAAAACGATGATGATAATGATGATGAGCAATGGGTGACGGTGAGGAGCAATGAGTTCCATGAAGAATTATCCTTTCACAAAACAGACACTACTTTTAATATGGTTAGTGATGAGGAAACCGGATTCGTTACTTTATGTGAACCTAAAATTGTAGTAGAATTTAGTAGATGGAATGCTATCACTTGTGATGATTGTTATCTTAGAGGCAGAAACTGTGATTGTCGCTGCAGAGAATCATTATTGTCAGTTTGTGTGTCTGTAGTGATTGTTCTCCATGAAAAATTCGATTCTCCTCAGATGGGAATTTTTATTTTTATCATGCATTGCTTTCTGTTACTGTTCTCTCTGTCTCTCTCTATTTCAACGCTTTTCATTTTCATCACTATAATATAA 1308 0.5023 MDWTRGHMLGRGSTAAVYIAESRRSGQVFAVKSAELHRSEFLQREEMILSTLKCPHIVAYQGFDTTFENGVYWFNMFMEYAPHGTLAERGGGMDEAVVGSYTRQILQGLHYLHSSGIVHCDVKGQNVLVTEKGVKIADLGCARRVGEVSVIAGTPAFMSPEVARGEQQGFPADVWALGCTVLEMITGKPPWHGGGDPAGVVYRIGFSDELPEIPSCVSEQGRDFLGKCLRRDPNERWSVEELLGHGFVKECTELKLLLLDSDTPTGVLERGFWDSLETTEHGARDCPSPTDRIRSLFSDEPLWVWKNDDDNDDEQWVTVRSNEFHEELSFHKTDTTFNMVSDEETGFVTLCEPKIVVEFSRWNAITCDDCYLRGRNCDCRCRESLLSVCVSVVIVLHEKFDSPQMGIFIFIMHCFLLLFSLSLSISTLFIFITII* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0952 435 CDD STKc_MAPKKK 2 248 - -
Vra10g0952 435 SUPERFAMILY Protein kinase-like (PK-like) 2 276 IPR011009 -
Vra10g0952 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vra10g0952 435 Pfam Protein kinase domain 5 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0952 435 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 349 - -
Vra10g0952 435 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0952 435 Gene3D Transferase(Phosphotransferase) domain 1 2 276 - -
Vra10g0952 435 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vra10g0952 435 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0952 435 PANTHER MAP KINASE KINASE KINASE 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0952 Vra-Chr10 15344099 15346242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0952 1 276 MAP Kinase Kinase Kinase AT2G32510 53.793 1.64e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra10g0952 Pkinase 4.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0952 K20716 - gmx:100802174 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0952 10 15344099 15346242 Vra10g0952 10 15344099 15346242 ECH
Vra5g2739 5 34442102 34443413 Vra10g0952 10 15344099 15346242 ECH