Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0950 ATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCCTCTCAATCTCTCTCATTATTCCCTTCCAAACACACTTCCACTTCTTTCTCCAAACTCACCAGCGACACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGTCCAGCTGCCAAGGACGACGAACACAACCGCAAAGTCGTCGGTGAAGTCGACTTCTTCTCTGATAGAATCACCAAACCAACCTCCCCACCCTCCCACGACCAACACGTTAAACCCAACATCGTCAAGAAGGAAATTGTTGAAACACCTCTCCACGTTAATACTGGTTTACAACTCCTTACTGCAAACACCGGAAGTGACCAATCGACCGTCGATGATGGGGTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGCTTGCACAGATGCAAGTGGAGCTTCAACGCATGAACGAAGAGAACAAGAAGCTGAAAGAGATGCTAAGCCATGTGACCGGTAACTACACGGCCTTGCAGATGCATCTCATGACATTAATGCATCAGAACCAGCGCACAGTGAACACAGAAAATGAGGTTGTTCAGGGAAAGGCGGAGGATAAAAATCATGCTGTTGGTGGAGGAAAGGTTCCAAGACAGTTCCTTGATATAGGTCCCAGTGGCGCAGCCGAAGCAGATGACCAAGTGTCTGACTCTTCTTCCGATGAGAGAACACGATCGAGCACACCTCAGAACAATAACATTGAAGTTGGAACAAGAGACGGTGCGAGAAATGTTAATGCCAAAAGAGAGTTGGGTAGGGAAGAGAGCCCAGACTCAGAATCCCAAGGTTGGGGTCCTAATAAGCTTCAGAAAGTTAACCCTTCCAATGCTATCGATCAGTCCACTACAGAAGCCACGATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGATAAGCGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGGAACCCATGTCCTCGAGCATATTATAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACAATTTTGGTTACAACTTATGAAGGTACACATAACCATCCACTGCCACCTGCCGCTATGGCCATGGCGTCAACCACTACAGCTGCTGCTAGCATGTTACTGTCAGGGTCAATGTCCAGTGCAGATGGAATTATGAACCCCAATTTGCTAGCCAGAGCAATCATTCCTTGCAATTCTAGCATGGCAACACTATCAGCTTCAGCACCATTTCCAACTGTGACTTTGGACCTCACACATAACCCGAACCCGTTGCAGTTTCAGAGACCAGCTACCCCATTCCAAGTGCCCTTCCTCCAAGGACAGCCTCAGAACTTTGGATCCGGAGCCACCCCAATTGCACAAGCACAAGCACTTTATAATCAATCAAAATTCTCCGGTCTTCAACTATCTCAGGAAGTAGGTTCTTCCCAGTTGGCCGCACAAGCTCCTAGACCACCTTTACAGTCTAGCCAGCAACCCTCGTCGGCTGATACAGTCAGTGCCGCCGCGGCCGCTATCACCTCCGATCCAAACTTCACCGCCGTCCTCGCCGCCGCCATCTCCTCTATCATAGGCGGTGCTCATAATGCAAACAATAACACCAATAACAACAACAGCACAAGCAGGACTACCATCAGCAGCTTTTCAGGAAACTGA 1710 0.4901 MDKGWGLTLDTSSSQSLSLFPSKHTSTSFSKLTSDTMFPLLGFPVNLSRPAAKDDEHNRKVVGEVDFFSDRITKPTSPPSHDQHVKPNIVKKEIVETPLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQMQVELQRMNEENKKLKEMLSHVTGNYTALQMHLMTLMHQNQRTVNTENEVVQGKAEDKNHAVGGGKVPRQFLDIGPSGAAEADDQVSDSSSDERTRSSTPQNNNIEVGTRDGARNVNAKRELGREESPDSESQGWGPNKLQKVNPSNAIDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAIIPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRPATPFQVPFLQGQPQNFGSGATPIAQAQALYNQSKFSGLQLSQEVGSSQLAAQAPRPPLQSSQQPSSADTVSAAAAAITSDPNFTAVLAAAISSIIGGAHNANNNTNNNNSTSRTTISSFSGN* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0950 569 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0950 569 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 31 556 IPR044810 GO:0003700
Vra10g0950 569 SUPERFAMILY WRKY DNA-binding domain 306 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0950 569 SMART WRKY_cls 313 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0950 569 MobiDBLite consensus disorder prediction 7 23 - -
Vra10g0950 569 MobiDBLite consensus disorder prediction 252 267 - -
Vra10g0950 569 MobiDBLite consensus disorder prediction 270 298 - -
Vra10g0950 569 MobiDBLite consensus disorder prediction 1 23 - -
Vra10g0950 569 MobiDBLite consensus disorder prediction 493 514 - -
Vra10g0950 569 Coils Coil 130 164 - -
Vra10g0950 569 MobiDBLite consensus disorder prediction 195 307 - -
Vra10g0950 569 Gene3D WRKY domain 298 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0950 569 Pfam WRKY DNA -binding domain 315 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0950 569 MobiDBLite consensus disorder prediction 112 132 - -
Vra10g0950 569 MobiDBLite consensus disorder prediction 231 249 - -
Vra10g0950 569 PANTHER WRKY TRANSCRIPTION FACTOR 6 31 556 - -
Vra10g0950 569 MobiDBLite consensus disorder prediction 546 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0950 Vra-Chr10 15323251 15326017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0950 1 556 WRKY Transcription Factor Family AT1G62300 51.741 5.01e-162 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra10g0950 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0950 - - pvu:PHAVU_006G147800g 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0950 10 15323251 15326017 Vra10g0950 10 15323251 15326017 ECH
Vra5g2737 5 34422357 34425298 Vra10g0950 10 15323251 15326017 ECH