Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0948 ATGGCTACCTCTTCTTTACTCCTCTTGCTTTCATGCTTCATACTAAACCTTGCATCTTCATCACAAACTGCTGTCCTCAACAAGATAGACTCATGCAGGCTTGCCAAATCCAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCCATTGGCTTTGGAACTTATGCCATTGGAGGCAAGTATGGAGCAATATATCAAGTCACAGATCCCTCTGATGATCCCATAAAACCAAAACCAGGCACACTTCGTCATGCTGTGGTCCAAACACAACCCCTTTGGATCATTTTTGCCAAAGATATGACTATTCAGCTCAAGAACGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTGCAAATGGCCCCTGCATTACAATACAAGGTGTTAGCCATGTTATCATACATGGCATTAGCATCCATGATTGCAGACCAAGCAAAGCTGGCCTTGTAATGAGCACCCCGTCTCATGTTGGCCATCGCCGAGGCTCTGATGGAGATGCCATTAGCATATTTGCCTCCTCAAATGTTTGGATTGATCACTGTTTTTTGGGTCGTTGTGTTGATGGCTTGATTGATATTATTCATGCCTCAACTGCGATTACCGTTTCTAACAATTACTTTACCCAGCATGACAAAGTTATGCTGCTAGGACACAGCGATGAATACTCAGCAGATAAAATAATGAAAGTAACAATAGCATTCAACCGATTTGGTAGTGGTCTAATTGAGAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCCATAGGGGGGAGTTCTAACCCAACCATTCTAAGTGAAGCAAACTACTATGTAGCTCCGAATAACCCTTCTTCAAAACAGGTTACGAAAAGGGAAATGAATGGAAAATTGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCCTAAACGGTGCTTATTTTGTTCCATCAGGCTATGGAAGTTGTGACCCAAACTATTCACCTTCTCAATCTTTTACTGCTGCACCTGCTTCATTGGTGCCTTCTATAACTCTAAACGCAGGTCCCCTAACTTGTGTTTTTGGTAAACCATGCTAG 1122 0.4269 MATSSLLLLLSCFILNLASSSQTAVLNKIDSCRLAKSNWASNRQALADCAIGFGTYAIGGKYGAIYQVTDPSDDPIKPKPGTLRHAVVQTQPLWIIFAKDMTIQLKNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCRPSKAGLVMSTPSHVGHRRGSDGDAISIFASSNVWIDHCFLGRCVDGLIDIIHASTAITVSNNYFTQHDKVMLLGHSDEYSADKIMKVTIAFNRFGSGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEANYYVAPNNPSSKQVTKREMNGKLKSWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPSQSFTAAPASLVPSITLNAGPLTCVFGKPC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0948 373 PANTHER PECTATE LYASE 18-RELATED 15 371 IPR045032 GO:0030570
Vra10g0948 373 PRINTS Pollen allergen Amb family signature 49 66 IPR018082 -
Vra10g0948 373 PRINTS Pollen allergen Amb family signature 72 97 IPR018082 -
Vra10g0948 373 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Vra10g0948 373 PRINTS Pollen allergen Amb family signature 172 193 IPR018082 -
Vra10g0948 373 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Vra10g0948 373 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Vra10g0948 373 PRINTS Pollen allergen Amb family signature 314 338 IPR018082 -
Vra10g0948 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Vra10g0948 373 SMART amb_all 100 297 IPR002022 -
Vra10g0948 373 PANTHER PECTATE LYASE 15 371 - -
Vra10g0948 373 Gene3D - 26 366 IPR012334 -
Vra10g0948 373 Pfam Pectate lyase 106 291 IPR002022 -
Vra10g0948 373 SUPERFAMILY Pectin lyase-like 27 364 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0948 Vra-Chr10 15307997 15309828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0948 27 373 Polysaccharide Lyase AT1G11920 69.828 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0948 K01728 - gmx:100799106 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0948 10 15307997 15309828 Vra10g0948 10 15307997 15309828 ECH