Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0947 ATGGCCACTTTAACCATTATTCTCCTAGTACTCTCAGCATGCTCTCTATCCACCTTAGCTTCAACATTGAATAACAGAGATTCAACAAAGGAGTTCGATGCCCTCTCTCCCATTCCAAGCTATATCACCCAGAGTAGCCCTAAGAATGTTGTGATGAACACAATAGATTCATGTTGGCGAGCCAAAACAAATTGGGCTTCTAATCGCCAATCCTTGGCGGATTGTGCAATTGGCTTTGGCAAAGATGCCATAGGAGGAAAGTTTGGTGATGTATATGAAGTCACCGATCCTTCTGATGACCCTGTAGACCCAAAACCTGGCACACTTCGTTATGGTGCAATCCAAACAGAACCCCTTTGGATAACTTTCGCCGAGGACATGGTCATCTCGCTAAAGAATGAGCTCATGGTGAATAGCTACAAAAGCATTGATGGGAGAGGAGCCAAAGTGGAGATTGCAAACGGGGCTTGCATTACGATACAAGGTGTTAGCCATGTAATCATACATGGAATTAGCATTCATGATTGTAAGCCTGGTGATGGTGGCATGGTTAGGAGCACTCCTGAGCATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATCAGCATATTTGCCTCCTCCAATGTGTGGATTGACCATTGCTTTTTGGCTCGTTGCACCGATGGTCTCATTGATGTTATTCATGCCTCCACTGCAGTCACCATCTCTAACAATTACTTCACCCACCACGACAAAGTGATGCTGCTAGGGCACAGCGATGAATACAGCGCGGATAAAGTAATGAAAGTAACAGTAGCTTTTAACCACTTTGCCAGTGACTTAATAGAAAGAATGCCAAGGGTGAGATTTGGTTATGCTCATGTGGTGAACAACCGGTATGACGAGTGGCTGATGTATGCCATTGGTGGCAGTGCCGACCCTACCATTTTCAGTGAAGGCAACTACTTTACGGCTTCAGATGATTCTTCTGCAAAACAGGTTACGAAGAGGGAAAGTAGTGAAAAGTGGAAGAATTGGAAATGGAGGAGTTATGGAGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGCAGCCCATTGTATTCATCTGCTCAAACTTTCACAGCCACCCAGGCATCCATGGTGCCCTTGTTAACTCTCAATGCAGGGCCACTCAACTGTGTTCTTCACAAACCTTGTTAA 1200 0.4492 MATLTIILLVLSACSLSTLASTLNNRDSTKEFDALSPIPSYITQSSPKNVVMNTIDSCWRAKTNWASNRQSLADCAIGFGKDAIGGKFGDVYEVTDPSDDPVDPKPGTLRYGAIQTEPLWITFAEDMVISLKNELMVNSYKSIDGRGAKVEIANGACITIQGVSHVIIHGISIHDCKPGDGGMVRSTPEHVGYREGSDGDAISIFASSNVWIDHCFLARCTDGLIDVIHASTAVTISNNYFTHHDKVMLLGHSDEYSADKVMKVTVAFNHFASDLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSEGNYFTASDDSSAKQVTKRESSEKWKNWKWRSYGDEFLNGAYFVPSGYGSCSPLYSSAQTFTATQASMVPLLTLNAGPLNCVLHKPC* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0947 399 Gene3D - 52 392 IPR012334 -
Vra10g0947 399 SMART amb_all 126 323 IPR002022 -
Vra10g0947 399 SUPERFAMILY Pectin lyase-like 52 390 IPR011050 -
Vra10g0947 399 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Vra10g0947 399 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Vra10g0947 399 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Vra10g0947 399 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Vra10g0947 399 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Vra10g0947 399 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Vra10g0947 399 PRINTS Pollen allergen Amb family signature 340 364 IPR018082 -
Vra10g0947 399 PRINTS Pollen allergen Amb family signature 370 393 IPR018082 -
Vra10g0947 399 PANTHER PECTATE LYASE 17 397 - -
Vra10g0947 399 Pfam Pectate lyase 132 317 IPR002022 -
Vra10g0947 399 PANTHER PECTATE LYASE 18-RELATED 17 397 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0947 Vra-Chr10 15303511 15305455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0947 1 399 Polysaccharide Lyase AT4G22080 64.662 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0947 K01728 - gmx:100803229 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3045 7 50261213 50262935 Vra10g0947 10 15303511 15305455 PCT