Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0939 ATGCCTGCTCATCCTTCCGCTCTTTCTCCCTCCCTCGCTTTCATCTTCCTTTCTCTTCTTCCTCTTTCCCTCGCCAACACTGATCCTACTGATGTTCAAGCTCTCGAGGTTATGTACAATGCGTTGAATGGTTCAACTCAGTTAACGGGTTGGAGAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGTAACTTGTGAAGGTTCAGCCGTTGTTTCCATTGAGCTCTCAGGATTAGGACTCGATGGGACTCTGGGGTACCTGCTTTCGGACCTTGTGTCACTCAGAAAGCTTGACTTGAGTGACAACAAGATCCATGATACAATTCCCTACCAGTTGCCGCCAAATCTTACAAGCCTGAATCTTGCAAGAAACAATTTATCTGGAAATCTTCCTTATTCCTTTTCTGCTATGGTTTCTCTCAATTATTTGAATTTAAGCAATAATGCACTGTCCATGGCAGTTGGCGATGTTTTTGCTAATCTTTCAGATCTAGATATCCTGGATCTATCATTCAATAACTTCTCGGGGGATCTTCCTCCTTCATTTGGTTCACTGGCCAATCTTTCTTCTCTTTTCTTGCAGAAAAACCAGTTGACTGGTTCTCTTAGTGTTCTCGTTGGTTTGCCTTTGGATACTTTAAATGTTGCGAACAATAATTTCAGTGGATGGCTACCTCGTGAAATTACTTCCATACATCTTTTCATATATGATGGAAATTCATTTGAGAACCCTCCTGCTCCTCTTCCACCAGCAGTAACTTCTCCTCCTCCCAGTGGATCCCGTAATCATCATCACTCTGGATCTGGCTCACATAATAAAACACAAGCCTCTGATAATGAAAATTCTGATGGCCATACGGGTTTGAAAGTGGGGGCTGTTGTGGGCATTGTGTTAGGTTCCATAGTGGTGGCTGCCATTGTGCTGCTTGCTTTTGTTTTCTGCATCCAAAAGCAAAAGGGGAAGAAAAAAGGTGCAAGGAATTTTAGTGGGAGCCTTCCTCGTGGAGTTATTAATGTAACTCCTCAGATGCAAGAACAGAGGGTAAAGAGCGCTGCTGTTGTTACAGACCTGAAGCCTCGTCCAGCAGAAAATGTATCAGTTGAGAGATTACCTACTAAAAGTGGATCAGTACGGCATATGAAGTCCCCTATAACTTCAACGTCGTACACAATTGCTTCTCTCCAAAGTGCTACAAATAGCTTTAGCCAAGAATTTATAATTGGTGAAGGTTCTCTTGGCCGTGTTTACAAGGCTGATTTCCCAAATGGGAAGGAAATGGCTATCAAGAAAATCGACAACTCTGCACTGTCATTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCACGCCTGCGGCACCCGAACATTGTGACATTGACTGGATATTGTGCTGAACATGGCCAACGACTTCTAGTTTATGAGTATATAGGAAATGGAAATCTGCATGACATGCTCCATTTTGCTGAAGAAAACAGCGGCAAGGCTTTGTCTTGGAATTCTCGTGTTCGCATAGCACTTGGCACAGCCCGGGCATTAGAGTACTTGCATGAAGTGTGTTTGCCCTCTGTTGTGCATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTAAATCCTCACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACAGAGCGGCAGGTATCGACTCAGATGGTCGGTTCATTTGGTTACAGTGCTCCTGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTAGAATTGTTGACTGGTCGGAAGCCGCTAGACAGTTCACGAATTCGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCATGATATAGATGCCTTGGCAAAAATGGTGGATCCTACTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCGTTAGTCCGGCTAGTGCAAAGAGCAAGTGTGGTTAAAAGACGACCCAGTGATGAATCTGGCATTGGTCACAAGACCCCAGAACATGAGGCCATAGACATGTCATTTTAA 2142 0.4412 MPAHPSALSPSLAFIFLSLLPLSLANTDPTDVQALEVMYNALNGSTQLTGWRIGGGDPCGESWKGVTCEGSAVVSIELSGLGLDGTLGYLLSDLVSLRKLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSFSAMVSLNYLNLSNNALSMAVGDVFANLSDLDILDLSFNNFSGDLPPSFGSLANLSSLFLQKNQLTGSLSVLVGLPLDTLNVANNNFSGWLPREITSIHLFIYDGNSFENPPAPLPPAVTSPPPSGSRNHHHSGSGSHNKTQASDNENSDGHTGLKVGAVVGIVLGSIVVAAIVLLAFVFCIQKQKGKKKGARNFSGSLPRGVINVTPQMQEQRVKSAAVVTDLKPRPAENVSVERLPTKSGSVRHMKSPITSTSYTIASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKEMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLTGYCAEHGQRLLVYEYIGNGNLHDMLHFAEENSGKALSWNSRVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRIRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGIGHKTPEHEAIDMSF* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0939 713 Gene3D Phosphorylase Kinase; domain 1 366 481 - -
Vra10g0939 713 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 25 709 - -
Vra10g0939 713 CDD STKc_IRAK 410 682 - -
Vra10g0939 713 Gene3D Ribonuclease Inhibitor 28 276 IPR032675 -
Vra10g0939 713 MobiDBLite consensus disorder prediction 693 713 - -
Vra10g0939 713 MobiDBLite consensus disorder prediction 260 286 - -
Vra10g0939 713 Pfam Protein kinase domain 407 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0939 713 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Vra10g0939 713 MobiDBLite consensus disorder prediction 248 286 - -
Vra10g0939 713 PANTHER OS01G0253100 PROTEIN 25 709 IPR045271 GO:0004714|GO:0006468
Vra10g0939 713 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vra10g0939 713 ProSiteProfiles Protein kinase domain profile. 404 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0939 713 SUPERFAMILY Protein kinase-like (PK-like) 379 679 IPR011009 -
Vra10g0939 713 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Vra10g0939 713 SMART LRR_typ_2 94 122 IPR003591 -
Vra10g0939 713 SMART LRR_typ_2 164 187 IPR003591 -
Vra10g0939 713 SMART LRR_typ_2 188 211 IPR003591 -
Vra10g0939 713 SMART LRR_typ_2 140 163 IPR003591 -
Vra10g0939 713 Gene3D Transferase(Phosphotransferase) domain 1 482 701 - -
Vra10g0939 713 SUPERFAMILY L domain-like 49 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0939 Vra-Chr10 15255147 15262086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0939 140 713 Strubbelig Receptor Gene Family AT4G22130 69.217 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vra10g0939 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0939 - - gmx:100781455 1183.7