Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0932 ATGCCAGGAATGGCAGCGTATCAGTGGCAGTGCAGGAAAAGAGAGGGAGAGCTTTCATTGGGAAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACGATGATAACAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCATCCCAACCACCGCAGCAACAACAATGGAAGCTCCTCCTCCTCCTCCTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCCTGTGCTTCTACGGTGACAATGACCGGAGATGCAGCTGGATCGAGCTGCATAGGTGAGGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTACGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAAAGGGTTGAGTGTCAGTTCAAAAATCTAACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGTGGTGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACGTCGACACTGTTATGGCCAATCCATTTCCCATGGATCTCTCCCATCCCATGCTCTAG 990 0.4848 MPGMAAYQWQCRKREGELSLGSNSGTPSIMLDNNHNNNDDNNNTGVGYYFMESGHPNHRSNNNGSSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASTVTMTGDAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRVECQFKNLTVSSSDFGCNEGGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0932 329 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Vra10g0932 329 MobiDBLite consensus disorder prediction 55 75 - -
Vra10g0932 329 Pfam KNOX2 domain 127 174 IPR005541 GO:0003677|GO:0005634
Vra10g0932 329 Gene3D - 236 298 - -
Vra10g0932 329 SMART HOX_1 233 298 IPR001356 GO:0003677
Vra10g0932 329 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Vra10g0932 329 Pfam ELK domain 211 232 IPR005539 GO:0003677
Vra10g0932 329 PANTHER - 21 318 - -
Vra10g0932 329 SUPERFAMILY Homeodomain-like 233 309 IPR009057 -
Vra10g0932 329 MobiDBLite consensus disorder prediction 18 48 - -
Vra10g0932 329 MobiDBLite consensus disorder prediction 18 75 - -
Vra10g0932 329 SMART KNOX2_2 124 175 IPR005541 GO:0003677|GO:0005634
Vra10g0932 329 ProSiteProfiles ELK domain profile. 211 231 IPR005539 GO:0003677
Vra10g0932 329 SMART KNOX1_2 73 117 IPR005540 GO:0003677|GO:0005634
Vra10g0932 329 Pfam KNOX1 domain 74 113 IPR005540 GO:0003677|GO:0005634
Vra10g0932 329 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Vra10g0932 329 CDD homeodomain 243 295 IPR001356 GO:0003677
Vra10g0932 329 SMART ELK_2 211 232 IPR005539 GO:0003677
Vra10g0932 329 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0932 Vra-Chr10 15208895 15214794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0932 48 329 Homeobox Transcription Factor Family AT1G62360 75.433 1.33e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra10g0932 KNOX2 5.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0932 - - gmx:100805837 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3039 7 50201568 50206584 Vra10g0932 10 15208895 15214794 PCT