Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0923 ATGAGTCAACTCGGAGTGGTGTTGCAGGAATCGCTACAGAGGGAGCCCAGAACCATTCTGGGGTTGTTGAGGGATCAGATGGACGGTGTAGAGCCTGGGGCTCGCAGGAAGAAGACCTTCAAGGAACGCTTCGGATTCATAGGCATCGGCTGCTGTGGGGCCACGTGGGGATTCCGTTCTCACGCGTTAAGTTTCACCCAAGGAGAACAACAGCAGCAGGCCAACCACCAGGAAACGGATCCCGGTCAAGGGTCGGCTTTGGACTGTGTAGACCACGGCGCAGCGGCTTCGGGTATGAACTTGGCGGCGGCGCTTGCGGCTGAGCGGCAAATCCGTGGGCCGCAGGAGGAGGCGGGGAGAGCTCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGAGCGAAGGAGGAGAGTCCGCGGCGGTGGAGAAGGAAAAGGAGGAGGAGAAGGTTGATGTTGTGGGGAATGATTCGATGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCCTTCATCCCATGTGGTCACACTTTTTGCAGAGTGTGTTCCAGGGAACTGTGGCTGAATCGAGGGTCCTGTCCCCTCTGCAATCGCTCCATCCTCGAGATCCTCGACATTTTCTAG 636 0.5896 MSQLGVVLQESLQREPRTILGLLRDQMDGVEPGARRKKTFKERFGFIGIGCCGATWGFRSHALSFTQGEQQQQANHQETDPGQGSALDCVDHGAAASGMNLAAALAAERQIRGPQEEAGRAPGTPWRVSLMRLLEESEGGESAAVEKEKEEEKVDVVGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0923 211 SMART ring_2 163 200 IPR001841 -
Vra10g0923 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 211 IPR013083 -
Vra10g0923 211 CDD RING-HC 163 200 - -
Vra10g0923 211 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 211 - -
Vra10g0923 211 PANTHER OS01G0917900 PROTEIN 17 211 - -
Vra10g0923 211 Pfam Zinc finger, C3HC4 type (RING finger) 160 205 - -
Vra10g0923 211 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Vra10g0923 211 SUPERFAMILY RING/U-box 162 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0923 Vra-Chr10 15098380 15099436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0923 19 211 C3H Transcription Factor Family AT4G22250 56.061 9.28e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0923 - - gmx:100804292 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3035 7 50170534 50171349 Vra10g0923 10 15098380 15099436 PCT