Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0901 ATGTCTGGCGCAGAAGAAGACTCCACCAATCCGTTGCGGTGGCCATTTCAGTTCTTCGTCCGTACGGTGTCAACGGGGTCCAGCATGGTGATGACTGGTTACCCGGAAGAGTCCGTGAAGTCTGTCCTTGCGAAGATCGCATGGGTGACGGGAATGCCGCTGAGAGAACTAAGAGTGATATACAAGGGAAAACAACTTCAATTGGAGAAGACTCTGGTGGAGTCCGGCATCGAGAACGATTCCAATCTCAACATTGTTGGTCACTTGCGCAGCGGATTGTACCCCGCGGCGTCACGCCCTATCGACTACGTGCTATCCCTGCTTGCGCAGGTGTTTACCAGCAACAAACGGAGCGCGTGTGCTGCATTGAAGACCGTGAAGGTTCTCACCATGCGCCATTTTAGCCTCCCTGGTTTTGTGGAGCTTTACGCAGCCTCTAATGCCCCCACCATGCTGGTTTCGATCTACCACTCGTCATGTGACGCTGATTCCGGGCAATTAGCTGCGTCTTGCATAATCAATTTCATGAGTTGCGTGAGCACGAAGAATTGGCAGGGGGGTTCTATTGGCGCGGTGATGGAGTTTTGCAAGCAGCTTAGAAAGTTTGGGCATGGAGACCGTGATTATTTGTATCTTTCGTGTAGAAACACTTTGGGGCATTTGTTGAATACAATTGGGGTTTCCCATGATTCTGGGAGTGTGAAAAAGAGGGTTTCGCTTCGCGATGTTATTTCCTTTGTTCCCGAGCTTGTGGATTCGTTGTTAGTGAGTTTAGATTATAGTAAACGGTGTGGTGACACCATCCTCTCCATCACGAGGCCTTCGCCGGCAGAAGTTTCGGATTTGATAATATTCTTGGCCCCTTTGAGGAATGCAATTATTCTGCAGAAACAATATTTGGGAGGTTTTGTGAGTGATGATGATGAAAAATGTAGAGTGGAGAAGGATGATGATCAGTTGCTTGAGGAAGAAGTTGATTATCTTCGGCTTGTGTTTGTTCGGTTATTGAGCAAAATGGATGAGTGTTTTCGCGTCATGGCGGAATGCTTGGCGGGCAAGCAATCTGGTGGGAGGGGTTTTGTTCTCAATTACTCATGGTCTGAGTATCTTCGTATCTTGAAGGATTTGTATGATACTTCTAAGGTCTTTGATGGTGCAGAGGAAATGTTTTGGACAGTTTTGAGGTTTCATAAGAATATGCTGTCTGCGCTTGTTGTTGGGTTTGTGAAGAGAGGTGGTGATCATCGGTGGGTTCTTGATAACAAGAGTGTGACTAATTTTGAGTGTAGAAGGCACTTGGCATTGATTCTGTTCCCTGCTGTCGACGAAGACTTTGGCATGTTTCATGAAATGCTTATTGACAGGTCTCAGGTACTGGCGGAGTCCTTTGAGTACATAGGACGAGCGAAGCCGGAGTCTCTGCGTTCTCGTCTGTTTATGGAATTCAAAAACGAGAAAGCTACAGGACCGGGTGTGTTACGGGAGTGGTTTGTTCTGGTGTGTCGAGAAATATTTGATTCACGACATGCTCTTTTCGTGTCTTGCCCGAATGACTGCAGGAGATTTTATCCGAATCCTGCATCTAAGGTACATCCTCGACACCTTGAGTACTTTAGGTTCGCTGGTCGGGTTATTGCATTGGCTTTGTTGGAAAGGGTGCAAGTTGGTATTGTTTTTGATCGTGTATTTTTCGTGCAATTGGCTGGAATTCGTGTTACCTTAGAAGATATACGGGATGCAGATCCTTGCTTGTATAGAAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTTATTGACTCGGATGCATTAGGACTGACATTTGTTAGAGAGTTGGAGGAATTAGGATGCAGGGAAGTTGTCGATCTTTGTCCTGGTGGGAAAAACGTTGTATTGAATAGTCAGAACCGGGAGCACTATGTTGATCTTCTCATACAACATTATTTTGTAACATCCATATTTGAGCAGGTAGCAAACTTTGCCCAGGGTTTAGCTGATATTCTTTCCAGCTCAAACCTTCAACAGTTCTTCCAATGTTTAGAGCTTGAAGATCTTGATTGGATGCTGTATGGGAGTGAAAATACAATCTCTATTGAAGATTGGAAGGCACATACCGTGTACAAGGGCTATAAAGAGTCTGACTGTCAGATATCCTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCACAACAAAGGAGGGTTCTGCTTCTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGATTCCGTGGTTTGTCTTCCCCTCTGTCCATTTGCAGGACTGCAGAACCTAGCAATCGCCTGCCCTCATCTCACACATGTTTTCACCGTCTGTTTTTACCGGAGTATTCGTCTATTGCTGTTATGGAAGATCACTTTGGAGTCATCACTCAAGAACACATTGCTAGTAGTTTTGGTCTTAGTTAA 2430 0.4535 MSGAEEDSTNPLRWPFQFFVRTVSTGSSMVMTGYPEESVKSVLAKIAWVTGMPLRELRVIYKGKQLQLEKTLVESGIENDSNLNIVGHLRSGLYPAASRPIDYVLSLLAQVFTSNKRSACAALKTVKVLTMRHFSLPGFVELYAASNAPTMLVSIYHSSCDADSGQLAASCIINFMSCVSTKNWQGGSIGAVMEFCKQLRKFGHGDRDYLYLSCRNTLGHLLNTIGVSHDSGSVKKRVSLRDVISFVPELVDSLLVSLDYSKRCGDTILSITRPSPAEVSDLIIFLAPLRNAIILQKQYLGGFVSDDDEKCRVEKDDDQLLEEEVDYLRLVFVRLLSKMDECFRVMAECLAGKQSGGRGFVLNYSWSEYLRILKDLYDTSKVFDGAEEMFWTVLRFHKNMLSALVVGFVKRGGDHRWVLDNKSVTNFECRRHLALILFPAVDEDFGMFHEMLIDRSQVLAESFEYIGRAKPESLRSRLFMEFKNEKATGPGVLREWFVLVCREIFDSRHALFVSCPNDCRRFYPNPASKVHPRHLEYFRFAGRVIALALLERVQVGIVFDRVFFVQLAGIRVTLEDIRDADPCLYRSCKQILEMDADFIDSDALGLTFVRELEELGCREVVDLCPGGKNVVLNSQNREHYVDLLIQHYFVTSIFEQVANFAQGLADILSSSNLQQFFQCLELEDLDWMLYGSENTISIEDWKAHTVYKGYKESDCQISWFWEIVGRMSAQQRRVLLLFWTSVKYLPVEGFRGLSSPLSICRTAEPSNRLPSSHTCFHRLFLPEYSSIAVMEDHFGVITQEHIASSFGLS* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0901 809 ProSiteProfiles Ubiquitin domain profile. 16 92 IPR000626 GO:0005515
Vra10g0901 809 ProSiteProfiles HECT domain profile. 470 809 IPR000569 GO:0004842
Vra10g0901 809 Pfam HECT-domain (ubiquitin-transferase) 499 808 IPR000569 GO:0004842
Vra10g0901 809 Gene3D Hect, E3 ligase catalytic domain 692 807 - -
Vra10g0901 809 Gene3D Hect, E3 ligase catalytic domains 452 684 - -
Vra10g0901 809 SMART hect_3 468 809 IPR000569 GO:0004842
Vra10g0901 809 Gene3D - 15 94 - -
Vra10g0901 809 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 14 807 - -
Vra10g0901 809 CDD HECTc 449 792 IPR000569 GO:0004842
Vra10g0901 809 SUPERFAMILY Hect, E3 ligase catalytic domain 448 792 IPR035983 GO:0004842
Vra10g0901 809 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 14 807 - -
Vra10g0901 809 SUPERFAMILY Ubiquitin-like 5 92 IPR029071 -
Vra10g0901 809 Gene3D Hect, E3 ligase catalytic domain 570 652 - -
Vra10g0901 809 Pfam Ubiquitin family 19 89 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0901 Vra-Chr10 14897763 14903752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0901 17 116 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.000 1.44e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0901 - - var:108341618 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3018 7 50030987 50039856 Vra10g0901 10 14897763 14903752 PCT