Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0894 ATGGTTTCGCTGGAGGAATCACGGTCTAATTCGAGCCGTTTCCCCTTGGCCAGGAGTTACCTGTACCACTCCTCGGTTTCGTCCAAAACGCAGCGTCATACAGGAAGGTCCATGCGCACGATACGCTCCAATTTCTTCCAAGACGACAACAGCAGCTGCTCCTTCACCGAGAAATCCACCTGTGTATCGGAGAACCTCACTGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCGTCACGGAACAACAAATCCTTGAAGTCCTCACCCGCAGAGGAGGACTTCCTCGACCTCTCCCAGGCCTTCAGTGATTTCTCCGCATGTAGCAGCGACATCTCCGGCGAGCTGCAGCGCCTGGCGACACTCCCATCACCGGAATGCGTGCAGAAGAACAATATATCTGGAGAAGTGGACCCGGAGCAGGAGCCGGAGCCCTGCACGGGTTTCCTGCAGAGGGAGAGCTTCTCCACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAGATTTGCATCGACGGCCTCCAGTCGCAGTCGGTTGCGGTAAAGCGCTCCGCGGCGGCGAAGCTCCGGCTGCTAGCGAAGAACCGCGCCGACAACCGGGTTTTGATTGCAGAGTCCGGCGCGGTGCCTGTTCTAGTCCCCCTTCTCCGTTGTAGCGATCCTTGGACGCAGGAACATGCGGTAACGGCGCTGTTAAATCTATCTCTCCACGAGGACAATAAAATGCTGATAACCAATGCCGGAGCAGTGAAGTCGCTGATTTATGTGCTGAAAACGGGAACGGAAACTTCGAAGCAGAACGCGGCATGCGCGCTTCTGAGCCTGGCGTTAGTGGAAGAGAACAAAAGCTCCATCGGGGCTTCCGGAGCGATACCGCCCTTGGTTTCGCTTCTTCTGAACGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACGCTTTATAAACTGTGTTCTGTGAGGCAGAACAAGGAGAGGGCAGTGAGCGCCGGTGCGGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGCGGCATGGCGGAAAAGGCCATGGTGGTGCTGAACAGCCTGGCAGGCATTCAGGAAGGGAAGGACGCAATTGTGGAAGAAGGTGGGATCGCTGCTCTTGTGGAAGCCATTGAGGATGGGTCTGTTAAGGGGAAGGAGTTCGCGGTTCTGACCCTTCTTCAGCTCTGTGTTGACAGTATCAGAAACAGAGGGTTTCTTGTCAGAGAGGGTGGGATTCCTCCTCTCGTTGCCCTTTCTCAAACTGGGAGTGTTCGAGCTAAGCACAAGGCCGAAACGCTGCTTCGATATTTGAGGGAATCAAGACAAGAGGCGTCTACTTCGAGTTCTTAG 1374 0.564 MVSLEESRSNSSRFPLARSYLYHSSVSSKTQRHTGRSMRTIRSNFFQDDNSSCSFTEKSTCVSENLTDSVVDLRLGELASRNNKSLKSSPAEEDFLDLSQAFSDFSACSSDISGELQRLATLPSPECVQKNNISGEVDPEQEPEPCTGFLQRESFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGSGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSIRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0894 457 SUPERFAMILY ARM repeat 169 446 IPR016024 -
Vra10g0894 457 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Vra10g0894 457 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Vra10g0894 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Vra10g0894 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Vra10g0894 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Vra10g0894 457 PANTHER U BOX DOMAIN-CONTAINING 6 454 - -
Vra10g0894 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 454 - -
Vra10g0894 457 SMART arm_5 283 323 IPR000225 GO:0005515
Vra10g0894 457 SMART arm_5 201 241 IPR000225 GO:0005515
Vra10g0894 457 SMART arm_5 406 447 IPR000225 GO:0005515
Vra10g0894 457 SMART arm_5 365 405 IPR000225 GO:0005515
Vra10g0894 457 SMART arm_5 324 364 IPR000225 GO:0005515
Vra10g0894 457 SMART arm_5 242 282 IPR000225 GO:0005515
Vra10g0894 457 Gene3D - 156 456 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0894 Vra-Chr10 14825332 14828270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0894 109 450 U-box Gene Family AT2G23140 44.729 3.85e-84 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0894 - - gmx:100806768 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3012 7 49967873 49971738 Vra10g0894 10 14825332 14828270 PCT