Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0884 ATGGGTCGTTCTCGTGGGAATTTTCATCACGCCGACGAGGACCCCAACCAGAGATCAAGAAGAAAAAAAAATGCCGCCAGTGGAGAAAACTCGGAATCTGGAGCCGCAGGTCAAGGGGCAGGTGAAGGGAAAAAGGCTCTGTACCATTGCAATTATTGTAATAAAGACATAACAGGAAAAATCCGGATTAAGTGTGCCATGTGCCCGGATTTTGACTTGTGTATAGAGTGTTTTTCCGTTGGAGCTGAGGTGACACCTCACAAAAGCAACCATCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATCGAAATGTATGGCTTGGGAAACTGGACAGAAGTAGCTGAGCACGTTGGAACCAAAAACAAAGAGTCATGCATCGAACACTATAAAAACATATACTTGAGCTCCCCATTCTTTCCTGTTCCGGACATGTCTCATGTGGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCAAAGGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTTTAAAGGCAGAATCTCCCTTCTCTCCATCTAGAGCCAAGGTTGAAGATTCACATAAAGCTGGCACTGCTAATCGTTTGTCTTCCAATTTGAATTCAGAGTTAGATTCTGGTCCCTCGGGTAACACACACTCTGCAGCTGGTGCTAACCAAAAGGCATCTAATGTGACCAGGGGAAAAGGTGGTCCTGGAGTCATTAAAATGGAAGATTCTCAGATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCCTCGGGAAATGAAGGTCCTTCTTTAGTAGAATTGAGTGGTTACAATGCTAAAAGACAAGAATTCGATCCTGAGTATGATAATGATGCTGAACAACTACTTGCTGAAATGGAATTTAAGGATACTGACTCTGAGGAAGAGCGAGAGTTGAAATTACGTGTATTGCGTTTATATTCAAAGAGGCTTGATGAAAGAAAGCGGAGGAAGGATTTCATACTCGAAAGAAATTTGTTATACCCAAATCCATTGGAGAAGGATTTAACACCCGAGGAGAAGGCAATGTGTCGAAAATATGATATATTCATGCGCTTTCATTCTAAGGAAGATCACGATGAATTGCTTAGAACAATGCTCTTTGAGCATAGAAGTTGGAAAAAAATTCAAGATCTTAAGGAAGCCCGGTTAGCCGGATGCCGCAATTCATCTGATGCTGAAAAATATATCTCGTCGAAGAGAAAGAGGGAAGCTGAAGAAAATGCTCGAAGGACAAGGACAAAAGAAAGTGCTCAGGTTGGGCCTAGCAATCAGGGAATTCCAAATGCATTGACTTCTCCAGATTCAGCTGGTAAGGATCTGAGTGCAAGACCTGCAGGGCCAGCTACTTCTAGTTCTGTCAACGAGATGGATGGCATAGGATACAATGGAGCAGATTTACTTTCTGAAGCGGAGAAACGTTTGTGCTGTGAGCTAAGATTGTCTCCAGCTACGTATCTAAAAATGCAAGAGCAACTGTCACTGCAAATACTTGCTGGCACTGTCTCTGCAAAATCTGATGCTCATCAATTGTTCAAGTTGGATGCCATGAAAGTTGACAGGGTGTATGATATGCTTATTAAAAAGGGGATCGGTTTACCCTGA 1683 0.4272 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYKNIYLSSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDLSLKAESPFSPSRAKVEDSHKAGTANRLSSNLNSELDSGPSGNTHSAAGANQKASNVTRGKGGPGVIKMEDSQIDRDFGGKKPTSSGNEGPSLVELSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDSEEERELKLRVLRLYSKRLDERKRRKDFILERNLLYPNPLEKDLTPEEKAMCRKYDIFMRFHSKEDHDELLRTMLFEHRSWKKIQDLKEARLAGCRNSSDAEKYISSKRKREAEENARRTRTKESAQVGPSNQGIPNALTSPDSAGKDLSARPAGPATSSSVNEMDGIGYNGADLLSEAEKRLCCELRLSPATYLKMQEQLSLQILAGTVSAKSDAHQLFKLDAMKVDRVYDMLIKKGIGLP* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0884 560 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Vra10g0884 560 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Vra10g0884 560 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Vra10g0884 560 ProSiteProfiles SWIRM domain profile. 474 560 IPR007526 GO:0005515
Vra10g0884 560 MobiDBLite consensus disorder prediction 1 42 - -
Vra10g0884 560 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Vra10g0884 560 SUPERFAMILY RING/U-box 48 110 - -
Vra10g0884 560 MobiDBLite consensus disorder prediction 441 462 - -
Vra10g0884 560 SMART zz_5 44 89 IPR000433 GO:0008270
Vra10g0884 560 Gene3D - 41 96 IPR043145 -
Vra10g0884 560 MobiDBLite consensus disorder prediction 421 440 - -
Vra10g0884 560 MobiDBLite consensus disorder prediction 1 27 - -
Vra10g0884 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Vra10g0884 560 PIRSF Txn_adaptor_ADA2 35 559 IPR016827 GO:0003713|GO:0006357|GO:0035065
Vra10g0884 560 SMART sant 104 153 IPR001005 -
Vra10g0884 560 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Vra10g0884 560 Gene3D - 475 558 IPR036388 -
Vra10g0884 560 MobiDBLite consensus disorder prediction 193 285 - -
Vra10g0884 560 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 558 - -
Vra10g0884 560 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 558 IPR034318 GO:0003713|GO:0006357|GO:0035065
Vra10g0884 560 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Vra10g0884 560 Gene3D - 102 153 - -
Vra10g0884 560 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Vra10g0884 560 MobiDBLite consensus disorder prediction 421 482 - -
Vra10g0884 560 MobiDBLite consensus disorder prediction 214 249 - -
Vra10g0884 560 CDD ZZ_ADA2 48 96 IPR041983 -
Vra10g0884 560 CDD SANT 108 150 IPR001005 -
Vra10g0884 560 SUPERFAMILY Homeodomain-like 470 557 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0884 1 558 EF-hand Containing Proteins AT3G07740 47.569 4.28e-162 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra10g0884 Myb_DNA-binding 6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0884 K11314 - gmx:100811887 968.378