Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0879 ATGACGTCCATACCTTCTAAAAACCTATGTGTTCGGAGGCAACAATGTCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATTCTGAAGAGGGTTCTGCGGCACCTGAATTGGTGAAGGAAGAGAAGGCATCGTCCGGGGCTATGATTACTCCCTATGTTGGAATGGTTTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAACTTTGCTAGGAAGAATGGGTTCTCTATTAGGAAGGAAAGGTCTAGAATTAGCCCGCAGTTGGGGACTTACAAGCGTGACTTCGTTTGCTACCGGTCCGGCTTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCTGTGAGGTGTGGATGTGATGCAAAGATGTACCTATCCAAGGAGGTTGTAGAAGGGGTTTCCCAGTGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTTTTGGAAGATGATCAAGTGCGTCTTTTGCCCGCCTATCGTAAAATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTCTCCAAGGCAGGGTTTCCAATTCATCGGATAGTGAAAATGCTGGAACAGGAAAAGGGGATTCAGGGGGGGCAGCTGCCTTTCTTGGAAAGGGATGTGAGGAATTTTGTTCAAAACCGAAAAAAGGTTGTTCTAGAGAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGCGTGCAAAGTTATGAAAGAAGCGGATGATGAGTTTGTGTATGATTTTACTGTGGATGGGAATGATAAGGTTGAAAATGTAGCTTGGTCATATGGCGACTCAGTTAATGTAAATGCTATGTTTGGCGATGTTGTTTATTTTGATACATCTTATAGATCGGTCACTTATGGATTGCTTTTTGGAGTATGGTTTGGTATTGATAGCTATGGTAGAACTATTTTTTATGGTTGTGTTTTGTTGCAGGATGAAACACCGCAATCCTTCTCATGGGCATTACAGACTTTTGTCAGGTTCATGAGAGGAAGATGTCCACAAACTATTCTAACTGATCTAGACCCGGGACTTAGAGATGCGATTATAAGTGAATTTCCAGGAACTAAACATGTTGTCCCTCAATGGAATATTCTACACAAGGTACCCTGTTGGTTTTCTCCTACTCTGGGTTCTCGGTATGCAGAATTTAAATCTGAGTTCGATGCCTTATTTCACATTGAGAATACAGAAGAATTTGAACTTCAGTGGAGCCAGATGATTTCTGTGTTTGGACTTGGTTCAGATAGACATGCTGATTTACTATATACTGTTCGGGCATCCTGGGCACAAGCCTATGTAAGAGGTTACTTTCTGGCTCGAATGGCAACAATAACTTACTCAAAGTCTGTAGATGCATTTTTGAAAGGAATTTTCTCTGCTCATACGTGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAGTTTTCAACATCAAGCATTTAAGGAGACTCAATATATTCAGCTCAAAACTTGCATACCGATTGAAGAGCATGCGCGGAGTATTCTCACTCCTTTCGCTTTTAATGCCTTGCAGCAAGAGCTGATGCTAGCAATGCAATATGCTGCATCCGAAATGGCCAATGGATCATATATTGTGCGGCATTTCAAAAGGATGAACGGAGAACGGCTTGTAATATGGTTGGTTGAAGATGATCAGATACATTGTTCTTGCAAGGAATTTGAATCCTCAGGGATACTGTGCAGGCATGCTCTTCGGGTATTTGTAATAAAGAACTACTTTCAGTTACCTGATAAGTACTTTTTAGGTAGATGGAGGCGGGAATGCTCATTACTTGTTGTTGATGATAATAATAATAATCAAGGTGTTGGAGGGGAATGGTTTCAAGAATATCAGTCTCTGGCTGAAACTTTATTTCAAGAATCATCAATTACAAAGGAGCGATCTGACTATGTGCGTAAAGAACTGACGAAAGAACTTAATAGGATTCTTAACGAGGTTAGAAATCTCCCTGAGGCTGATGGAGTCTGCTTGAGCATGAACATGTCAGTTTCACCAGCCAACTAG 2085 0.4129 MTSIPSKNLCVRRQQCPCGDWKCYITYEGDSEEGSAAPELVKEEKASSGAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGTYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEQEKGIQGGQLPFLERDVRNFVQNRKKVVLENEALLSEKRENDVLELLEACKVMKEADDEFVYDFTVDGNDKVENVAWSYGDSVNVNAMFGDVVYFDTSYRSVTYGLLFGVWFGIDSYGRTIFYGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILTDLDPGLRDAIISEFPGTKHVVPQWNILHKVPCWFSPTLGSRYAEFKSEFDALFHIENTEEFELQWSQMISVFGLGSDRHADLLYTVRASWAQAYVRGYFLARMATITYSKSVDAFLKGIFSAHTCLRSFFEQVGISASFQHQAFKETQYIQLKTCIPIEEHARSILTPFAFNALQQELMLAMQYAASEMANGSYIVRHFKRMNGERLVIWLVEDDQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYFLGRWRRECSLLVVDDNNNNQGVGGEWFQEYQSLAETLFQESSITKERSDYVRKELTKELNRILNEVRNLPEADGVCLSMNMSVSPAN* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0879 694 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Vra10g0879 694 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Vra10g0879 694 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 680 IPR031052 GO:0006355
Vra10g0879 694 Pfam MULE transposase domain 291 384 IPR018289 -
Vra10g0879 694 SMART 26again6 573 600 IPR006564 GO:0008270
Vra10g0879 694 Pfam SWIM zinc finger 569 594 IPR007527 GO:0008270
Vra10g0879 694 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 27 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0879 Vra-Chr10 14724296 14728084 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra10g0879 MULE 3.9e-14 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0879 - - gmx:100817107 1308.12