Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0872 ATGGGCAATGTGAATGGGAGAGACGATGTCAACGGTTCTCCCTCCGAGACCGAAGGAGAAGAAGAAGAAGACGACGACGAAGCTGCCGCTGTTGCACCTACTCACGGTGTCGCCGATTGCATGTCCGCCAACCCTGGCTATCGTGCGCCTTCCGATATGATGGGTCATTCTCCCCCTGCTAGCCCTAGAACCACCCAATCTCCCTTCATGTTCGCCCCACAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCATACTCCAAGCCCTTCCTGGATGCAGACTACGTCAGGGTACGAGGATATGTACAGTGAACTCGGAATTCCAACGATGATTACTTGGAGTTATGACGGGAAAGAAGTGGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGTCCTTACAGAGATCAGGGAAGGATTTCACAATAATGAAAGTGTTGCCATCCGGTGTATACCAATTTCGATTTATTGTGGATGGCCAGTGGAGGTATGCACCTGACTTGCCTTGGGCTCAAGACGATGCGGGTAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAGGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCATATTTGCAAATGACGCTTCTTAATATTCCGTCAACAAATATGGAAATCCAACCTCTTACAGCCAGACCTCAGCATGTAGTGCTCAATCATCTTTACATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTCGCACTTGGCACTACTCATCGGTTTCTAGCCAAATATGTGACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 891 0.4714 MGNVNGRDDVNGSPSETEGEEEEDDDEAAAVAPTHGVADCMSANPGYRAPSDMMGHSPPASPRTTQSPFMFAPQVPVVPLQRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWKTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEIQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFLAKYVTVVLYKSLQR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0872 296 MobiDBLite consensus disorder prediction 1 67 - -
Vra10g0872 296 Pfam Glycogen recognition site of AMP-activated protein kinase 109 188 IPR032640 -
Vra10g0872 296 Gene3D Immunoglobulins 104 191 IPR013783 -
Vra10g0872 296 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 296 IPR043554 -
Vra10g0872 296 SMART AMPKBI_2 204 294 IPR006828 GO:0005515
Vra10g0872 296 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 222 292 IPR006828 GO:0005515
Vra10g0872 296 SUPERFAMILY E set domains 109 194 IPR014756 -
Vra10g0872 296 CDD E_set_AMPKbeta_like_N 110 186 - -
Vra10g0872 296 SUPERFAMILY AMPKBI-like 191 293 IPR037256 -
Vra10g0872 296 Gene3D - 197 294 - -
Vra10g0872 296 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0872 Vra-Chr10 14676791 14679694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0872 108 189 Protein tyrosine phosphatase (PTP) family AT3G01510 31.818 4.04e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0872 K07199 - gmx:100777497 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2995 7 49864627 49878308 Vra10g0872 10 14676791 14679694 PCT