Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0870 ATGTGTATATATAGAGAGAGAGGGGATGGCATAAAAAAGGGTTACGTGTATATAATAAGTTTGTGTGTGGTGACATATATCAGTGTTGTTGACTATAGTGTGTGTGAGAGTGAGGTCATGGCCGAGTCCGATAACGATTCCGGAGGTCAAGCCGGAAACACGAGTGGAGGCAATGAATTCTCGGGGTGTAGAGAGCAAGACAGGTTCCTTCCGATAGCAAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGGGAACGCGAAGATCTCGAAAGAGGCGAAGGAAACCGTGCAAGAGTGTGTGTCGGAGTTCATCAGCTTCATAACAGGTGAAGCATCTGATAAGTGTCAGAAGGAGAAGAGAAAAACTATCAACGGTGATGACCTACTGTGGGCCATGACTACACTGGGGTTTGAGGAGTATGTGGAGCCTCTCAAGATTTACCTGCACAAGTATCGGGAGATGGAGGGGGAGAAAACTGCTATGATGGGAAGGCCACAGGGTGGTGGTGGTGGTGGAGGTAGTGGTGGCGGTGATCAGAGGGATGAGGCTTATATCCATGGCCATGCTCATGGAGGTATGGTGCCAAACTCTATGATGGCGATGATGGGGCATCAGGGACACGTGTATGGATCTGGGAGTGCGGGATCAGCATCTTCTGCAAGAACTAGATAG 675 0.4948 MCIYRERGDGIKKGYVYIISLCVVTYISVVDYSVCESEVMAESDNDSGGQAGNTSGGNEFSGCREQDRFLPIANVSRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAMMGRPQGGGGGGGSGGGDQRDEAYIHGHAHGGMVPNSMMAMMGHQGHVYGSGSAGSASSARTR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0870 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 69 133 IPR003958 -
Vra10g0870 224 MobiDBLite consensus disorder prediction 43 61 - -
Vra10g0870 224 ProSitePatterns NF-YB/HAP3 subunit signature. 100 116 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra10g0870 224 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 40 209 - -
Vra10g0870 224 SUPERFAMILY Histone-fold 66 171 IPR009072 GO:0046982
Vra10g0870 224 MobiDBLite consensus disorder prediction 161 183 - -
Vra10g0870 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 40 209 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra10g0870 224 Gene3D Histone, subunit A 59 181 IPR009072 GO:0046982
Vra10g0870 224 MobiDBLite consensus disorder prediction 42 62 - -
Vra10g0870 224 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vra10g0870 224 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Vra10g0870 224 PRINTS CCAAT-binding transcription factor subunit A signature 135 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0870 Vra-Chr10 14662799 14663633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0870 40 165 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.540 2.62e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra10g0870 CBFD_NFYB_HMF 9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0870 K08065 - gmx:100305641 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2993 7 49849895 49850674 Vra10g0870 10 14662799 14663633 PCT