Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0868 ATGGACCTCTTCGCCGCCGATCACTTCCCCGTCCCCGACCACGTCGCTCCATTTCCCGATTCCGGCGACCTTCTTTTCCCAGCCGACCTCCTCTCCTACCGCCACAACCCCCAGAAGCTCCGCCCCATCCGGCCCCTTCCCTCCGCTCTCAATGCCCACCCTCGTCCGCCCGATCCGATTGCCTCCGGGTCGGGTCACGCCCCGAGCCAAGAATCTGACTCGGCTTTGGATGCGGAGGATGAAGAGGAGAATGATGACAATTCATCGGCAAGCCCTGAAGGGAATGGCCCTAGAAAGAGGAGAAGAAAGACGGTGAGAAAGCTTGAAGGTTTTGTGAAGAATTTGGTGACAAAGGTGATGGAGAAGCAGGAACAGATGCACAAACAGTTGGTGGAAATCATAGAAAAGAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGAGGAAGAGGCTAGAGCTGAAGAAAAGTCTCGCAGTTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCACGAAATTCAAATCCCCCAAGCAGTAGAAGCATGCAGCAAAAGAGAAGAGGGTGAAGTTGAAGTGAATGCTCATAAAGAATTTAATAGTGATCCTAGTAAGAGTAGATGGCCTGATGTTGAAGTGCAGTCACTTATCACAGTGAGAACTTCATTGGAGCACAAGTTCCGTTTCATGGGATCGAAAGGGTCAATTTGGGAGGAGATATCTGAAGCAATGTATGCATTGGGCTATAATCGGTCTGCAAAGAAATGCAAGGAGAAGTGGGAAAACATCAACAAATACTATAAAAGGACAATAGGGAGTGGCAAGAAGAGGCGTCTAAATAGTAAAAGCTGCCCTTATTTTGATGAGTTGGACATTCTGTATAGAAACGGCCTCCTAAGTATTGGAAATGCCTTGAGCAATACCACTGATGCTCCCCAGATTGAACAAAAGGAGTAG 990 0.4798 MDLFAADHFPVPDHVAPFPDSGDLLFPADLLSYRHNPQKLRPIRPLPSALNAHPRPPDPIASGSGHAPSQESDSALDAEDEEENDDNSSASPEGNGPRKRRRKTVRKLEGFVKNLVTKVMEKQEQMHKQLVEIIEKKERERIKREEAWKNEEMERIRKEEEARAEEKSRSLALISFIQNLLGHEIQIPQAVEACSKREEGEVEVNAHKEFNSDPSKSRWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKRRLNSKSCPYFDELDILYRNGLLSIGNALSNTTDAPQIEQKE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0868 329 MobiDBLite consensus disorder prediction 39 105 - -
Vra10g0868 329 CDD GT1 217 281 - -
Vra10g0868 329 Coils Coil 120 170 - -
Vra10g0868 329 ProSiteProfiles Myb-like domain profile. 211 275 IPR001005 -
Vra10g0868 329 PANTHER - 69 326 - -
Vra10g0868 329 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 69 326 - -
Vra10g0868 329 Pfam Myb/SANT-like DNA-binding domain 217 302 IPR044822 -
Vra10g0868 329 MobiDBLite consensus disorder prediction 74 88 - -
Vra10g0868 329 Gene3D - 219 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0868 Vra-Chr10 14651205 14653032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0868 99 307 Trihelix Transcription Factor Family AT5G47660 44.643 1.21e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra10g0868 Myb_DNA-bind_4 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0868 - - pvu:PHAVU_006G139200g 559.681