Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0857 ATGATGAGTGAACAATTGGGGCTGCTAAAAGTCATTGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGACCAGTGATCCTTATGTTGTCCTGAAACTAGGGAACCAGACTGCAAAGACCAAGGTAATTAACAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTTAATTTCACTCTTACAGAACCCTTGGGAGTTCTGAATTTGGAAGTGTTTGATAAAGATCTGTTGAAGGCTGATGACAAGATGGGAAATGCTTTCCTCAACCTTCAACCATTAGTGTCTGCAGCGAGATTAAGAGATATCTTAAGAGTGTCCTCTGGTGAGACAACCTTAAGGAAGGTCATACCTGATACTGAAAACTGTCTTGTCCGTGAAAGCAGTATCAATTGTGTTAATGGTGAGGTGGTGCAGAATGTTTGGTTAAGGCTTCGTGGAGTAGAGTCTGGGGAACTAGAGTTGATCATCAAACTGGCCACTCCTATTACTCCTAAAACAGAGTGCAGAATTTGCAATTGTCCCAAGTGA 531 0.4237 MMSEQLGLLKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFLNLQPLVSAARLRDILRVSSGETTLRKVIPDTENCLVRESSINCVNGEVVQNVWLRLRGVESGELELIIKLATPITPKTECRICNCPK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0857 176 CDD C2_ArfGAP 6 151 - -
Vra10g0857 176 SMART C2_3c 8 103 IPR000008 -
Vra10g0857 176 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 159 IPR035892 -
Vra10g0857 176 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vra10g0857 176 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 2 164 IPR044562 -
Vra10g0857 176 Pfam C2 domain 8 100 IPR000008 -
Vra10g0857 176 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 11 2 164 - -
Vra10g0857 176 Gene3D C2 domain 1 117 IPR035892 -
Vra10g0857 176 PRINTS C2 domain signature 23 35 IPR000008 -
Vra10g0857 176 PRINTS C2 domain signature 47 60 IPR000008 -
Vra10g0857 176 PRINTS C2 domain signature 68 76 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0857 Vra-Chr10 14530154 14532437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0857 2 155 C2H2 Transcription Factor Family AT4G21160 44.805 2.41e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0857 - - gmx:100499880 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2989 7 49814700 49816447 Vra10g0857 10 14530154 14532437 PCT