Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0855 ATGATGATTCTGAAATTGGTAAGCCATTTCATCATTTTGGTAATATGGTTTATACATGTACAGGTATCTGCACAAGATTACCCACATGCACCTGTAGCAAAGCCTGGCTGTGATTCGCAGTGTGGAGATCTTCAAATTCCTTTTCCGTTTGGAATGAATGCTTCAGAATGCTACTTAGGGAAATGGTTTGAAATAGAATGCAGAAACACTTCCACATATCAAACACCTTACCTCAAGTCAATAGAACTGCAAGTCGTATCCATTGATGTCCAAGAAGGCACGGTTACTATCAACAATCCCATTTACCGTAACAACTGCGGAACCAAAGACCCTACGCCGGTGAACCGGTCGCTGGAAGGAAGCCCTTTCGTGTATTCGCAGGAACACAACAAATTTGTGGCCGCAGGTTGCGATATCATTGCATTGTTGCAGATAAATGGGTCAGAAGGTAGCGGTTGTGTGTCCATCTGCGACGAGGACTTGAAGGTGGATGATATTGGGAAAATGGAGCTTAAAAACAGTAATTGTAATGGGAAGTCCTGCTGTCAGAATTCCCTGCCAGCGTATCTTAAGGAATACAGCACTGAAGTAAAAGGTTTGAAGGAGAATGAAAGGGATGGTGAGTGTAGTTACGCCATGGTTGTACAGGAAGAAGAACTGAACCCATACGAATGGGACTACGTTCCACAGTATTCTTCTTATACTCCGAAAGGCTACTACTTTCCTGTGAATGGTGAGATGAAGGATTTGGATGTGGTCCCTGTGGTGCTTGAATGGGAGATTCTCAACAGCTTAAACCTTAAACTTCCTCCAGATGATCTTTCCCACTGTTTTGACACTAATATTACTTCTTCACTCCATAAACGTTCAGGTCAGAGATGTTCCTGCCCAGACGGTTCCGGTAATCCCTACGTTGACGGAGGTTGTTTAGGTAAATATAAAAAGGAAAATATTGATATGGTAAAATATGTAGGAGTTTCTACAAGCTTTGGATCTATTATTTTACTTCTTATTTTATGGCGGGTGTTCAAGGTTACAAAAAAAATCATAGTGAAGAAATTCAGAGAAAAATTCTTCAAAAGAAATGGAGGATTATTGTTACAACAAAAATTGTCTTCTGGTGAAGCTAATGTGGATAAAGTTAAAATCTTCAGCTTAAAAGAATTGGAGAAGGCCACTGATAACTTTAATTCAAACAGAGTACTTGGAAAAGGAGGTCAAGCTACAGTTTACAAAGGCATGTTGATAGATGGAACAATCATTGCAGTGAAAAAATTTAAGGTCCAAGGAAAGATTGAAGAATTTATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGGAACGTGGTTAAGTTATTAGGAAGTTGTTTAGAGACTAAAATTCCTTTGCTTGTCTATGAATTTATTCCTAATGGTAATCTTTTCGACTACTTGCATCAACAAAATAAGGATATGCCATTAACATGGGAGATGCGTTTGAGAATTGCCATTGAAGTTGCAGGAGCTTTATTTTACTTGCACTCTGCTGCTTCTCAACCTATTTATCATAAAGACATCAAGTCAACAAATATACTATTGGATGAAAAGTATAGGGCGAAAGTAGCAGACTTTGGTACATCAAGAATGATTTCCATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGACCCTGAATTTTTTCAAACTAGTCAATTTACAGAAAAAAGTGATGTCTACAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAGTAACCCTCCTAAGTCAAGAGGAAGCCAAAAGTTTAGCTTCATACTTCATCATGTGTGTGGAGAAAAATTGTGTGTTTGATATTATTGATGAAAGAGTGATGAAGGAAGGGGAGAATAATCATATAATGAAAGTTGTCAATCTTGCAAGTCGATGTTTAGAGTTGAATGGAAAGAGACGACCAACTATGAGGGAAATCACGTTGGAATTAGAAGCTATTCGAAAATTGGAAAATGAGTCTAATGCACGAGAAGGGCATGATGAATTTTTTAGAAGTAAAGACTATCAATCTTGGGATGATAATTCTATTATCTCAGAAATAATGTCAACTTTTGATCTAAGTAGCAGAATGACAATCTTGAAAGATGTTCATACTGTTACCATGTGA 2169 0.3762 MMILKLVSHFIILVIWFIHVQVSAQDYPHAPVAKPGCDSQCGDLQIPFPFGMNASECYLGKWFEIECRNTSTYQTPYLKSIELQVVSIDVQEGTVTINNPIYRNNCGTKDPTPVNRSLEGSPFVYSQEHNKFVAAGCDIIALLQINGSEGSGCVSICDEDLKVDDIGKMELKNSNCNGKSCCQNSLPAYLKEYSTEVKGLKENERDGECSYAMVVQEEELNPYEWDYVPQYSSYTPKGYYFPVNGEMKDLDVVPVVLEWEILNSLNLKLPPDDLSHCFDTNITSSLHKRSGQRCSCPDGSGNPYVDGGCLGKYKKENIDMVKYVGVSTSFGSIILLLILWRVFKVTKKIIVKKFREKFFKRNGGLLLQQKLSSGEANVDKVKIFSLKELEKATDNFNSNRVLGKGGQATVYKGMLIDGTIIAVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFDYLHQQNKDMPLTWEMRLRIAIEVAGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPVTLLSQEEAKSLASYFIMCVEKNCVFDIIDERVMKEGENNHIMKVVNLASRCLELNGKRRPTMREITLELEAIRKLENESNAREGHDEFFRSKDYQSWDDNSIISEIMSTFDLSSRMTILKDVHTVTM* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0855 722 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 18 683 - -
Vra10g0855 722 Gene3D Phosphorylase Kinase; domain 1 367 469 - -
Vra10g0855 722 Gene3D Transferase(Phosphotransferase) domain 1 470 692 - -
Vra10g0855 722 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 683 IPR045274 GO:0007166
Vra10g0855 722 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0855 722 SUPERFAMILY Protein kinase-like (PK-like) 378 664 IPR011009 -
Vra10g0855 722 Pfam Wall-associated receptor kinase galacturonan-binding 37 98 IPR025287 GO:0030247
Vra10g0855 722 ProSiteProfiles Protein kinase domain profile. 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0855 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Vra10g0855 722 Pfam Protein tyrosine and serine/threonine kinase 399 663 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0855 Vra-Chr10 14509258 14515242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0855 11 674 Receptor kinase-like Gene Family AT1G16130 42.556 1.85e-176 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vra10g0855 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0855 - - gsj:114368715 893.649