Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0852 ATGTCTCAAACCTTAACTCAGACCATGCACCCCGTCACTGAGATAGAAGAAGATAACTCCTCAGACTTTACCTTCAACAATCATCAACAAGAGAACAAGGAGGAGGAAGACACCGTCTATGTAGCCGTCGGAAAGAGCCCCAGTAGCATCCAAGCCTTGTCATGGACCCTCACCAACTTCACCACTCCATCTACCATTCTCTATCTCATACACGTTTTCCCAGAGATCAACCTCCTTCCAAATCCATTGGGAGTTGGAGTGATTCCGAAGGAGCAAGTGAGTCCTGAGCATGTAGAGAGCTACATGGCACAAGAAAGAGGGAAGAGAAGAGAGCTGCTTAACAAATTCCTCCAATTATGTTCTGCTTCCAAGGTTAAGGTCGAAACAATCTTGATTGAGAGTGACTTGATTGCAAAGGCTATCATCGACCTCATTCCCATTCTTCAAATAAGAAAACTAGTGATTGGAGCAAGCAAATCTCAAATACGAAAATTGAGATCAAAGAAAGGGAGTGGCATAGCTGATCAGATACTTCAGAATGCTCCAGAAAGTTGCAATGTGAGTATTGTATGTGAAGGAAAGGAAGTAAATGAACAGATAGCCGCTGCCATTGCCACTGATACTTCCATGTCCCAGAAAAACAAGCATCATCAAAATGCTTCGGTTTCCTGTGTTTGTTTCAACTTTTAA 690 0.429 MSQTLTQTMHPVTEIEEDNSSDFTFNNHQQENKEEEDTVYVAVGKSPSSIQALSWTLTNFTTPSTILYLIHVFPEINLLPNPLGVGVIPKEQVSPEHVESYMAQERGKRRELLNKFLQLCSASKVKVETILIESDLIAKAIIDLIPILQIRKLVIGASKSQIRKLRSKKGSGIADQILQNAPESCNVSIVCEGKEVNEQIAAAIATDTSMSQKNKHHQNASVSCVCFNF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0852 229 MobiDBLite consensus disorder prediction 1 35 - -
Vra10g0852 229 Gene3D HUPs 23 190 IPR014729 -
Vra10g0852 229 Pfam Universal stress protein family 38 183 IPR006016 -
Vra10g0852 229 MobiDBLite consensus disorder prediction 1 27 - -
Vra10g0852 229 CDD STK_N 38 193 - -
Vra10g0852 229 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 8 228 - -
Vra10g0852 229 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 8 228 - -
Vra10g0852 229 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0852 Vra-Chr10 14487927 14489601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0852 42 194 Plant U-box Gene Family AT5G57035 33.333 2.47e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0852 - - gmx:100777008 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2985 7 49789552 49790860 Vra10g0852 10 14487927 14489601 PCT