LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g0850	ATGGACTCAAAAACTAGCTCTAGATCTCTTCCGAAACACCATCAGAAGACGGCTGGAATTCAAACCCTTGAGGCAAAAGACAACGGGTCTTCAGGGAATCCAGCTTCTCTGAAAACAGGGAAAACTGAGCTGGCTGGTCCAGAGGATTTATCCAAGTCTGTAGGAACCGTTTCCAAACATAATACTGGGGAAACTGCTGAAAACAAGAAGTTAGGAGTTTCAATCCAAAAAGGGTCTGCCGATTCCTTGAGCAATAAAAGTAGTTCTGGTGCTTCTTCATCTGTTCTCGACAAGGCGGATCGTGCTGTTAATGAGAACTTAGGCTCACAGGAAAACTCCATTGATCAAGACAAAAAGACATCGGAATATGGAAGTGTAAAGAACAGTTCTGTTTCTGCCAAAGTTAGTGATGGGGCGAGCAGTCTCGCAAAGACAAGTGGAAGTGCCAAGATTAGTGACAGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTACAGAGGAAGCACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCATAAACAAACCTCACAAGGCAAATGACTTGAGATGGGAAGCCATTCAAGCAGTTCGAAGTAGAGATGGGGTTTTGGGATTAGGTCACTTTAGACTACTGAAGAGGCTGGGTTGTGGGGATATAGGCAGTGTTTACCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCGAGTCGCAAAAAGCTACTTCGTGCCCAGACAGAAAGAGAAATCCTGCAGTCTCTTGATCACCCATTTCTCCCAACTTTGTATACTCATTTTGAAACTGAGAAATTCTCATGTTTGGTAATGGAATTCTGCCCAGGTGGTGACCTCCATACTCTCAGGCAGAAGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTAGCAGAGGTCCTTCTGGCTTTGGAGTACCTGCACATGCTTGGGATTGTCTACCGTGACCTTAAGCCAGAAAATGTCCTTGTTAGAGACGACGGACATATTATGCTCTCTGACTTTGATCTCTCCCTCCGATGTGCTGTCAGTCCGACCCTTGTGAAAACCTCATCAACGGATTCTGAGCCTTTAAGAAAGAACCCCGTTTACTGTGTCCAACCTGCATGTATTGAACCACCTTCCTGCATCCAACCATCCTGTGTTGCCCCCACCACATGCTTTTCACCCCGGCTCTTCTCTAGCAAATCAAAGAAAGACCGGAAGCCAAAAACTGAAATTGGCAACCAAGTAAGCCCATTACCTGAGCTGATTGCAGAGCCTACTGATGCTCGGTCCATGTCATTTGTTGGAACTCATGAATACTTGGCACCTGAGATCATCAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGGATCTTTCTATACGAGCTGTTGTTCGGTAAAACTCCTTTCAAGGGATCCGGTAACCGAGCCACGCTGTTTAACGTGGTGGGGCAGCCGCTGCGTTTTCCAGAAGCACCTGTTGTGAGTTTTGCAGCAAGGGATCTTATAAGAGGGTTGCTGGTGAAAGAACCTCAGCACAGATTGGCATACAAAAGAGGTGCAACTGAGATAAAGCAACACCCTTTTTTTGAAGGTGTGAACTGGGCATTGATCAGATGTGCTACCCCACCAGAGATCCCAAAGGCTGTAGAGTTTGAGAAGATACCCTCCCCAGCCTCATCAGCTGGTGTTGAAAAGGCTGTTAACCACATGTCAATAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG	1839	0.4546	MDSKTSSRSLPKHHQKTAGIQTLEAKDNGSSGNPASLKTGKTELAGPEDLSKSVGTVSKHNTGETAENKKLGVSIQKGSADSLSNKSSSGASSSVLDKADRAVNENLGSQENSIDQDKKTSEYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSIYRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRSRDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSTDSEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPASSAGVEKAVNHMSIANQKGSDNYLEFDFF*	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra10g0850	612	SMART	serkin_6	216	554	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g0850	612	SUPERFAMILY	Protein kinase-like (PK-like)	191	575	IPR011009	-
	Vra10g0850	612	MobiDBLite	consensus disorder prediction	1	145	-	-
	Vra10g0850	612	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	337	349	IPR008271	GO:0004672\|GO:0006468
	Vra10g0850	612	PANTHER	FLIPPASE KINASE 1-RELATED	3	612	-	-
	Vra10g0850	612	ProSiteProfiles	Protein kinase domain profile.	216	554	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g0850	612	CDD	STKc_phototropin_like	215	572	-	-
	Vra10g0850	612	Pfam	Protein kinase domain	451	554	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g0850	612	Pfam	Protein kinase domain	217	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g0850	612	MobiDBLite	consensus disorder prediction	12	38	-	-
	Vra10g0850	612	Gene3D	Phosphorylase Kinase; domain 1	214	299	-	-
	Vra10g0850	612	PANTHER	SERINE/THREONINE KINASE FAMILY PROTEIN	3	612	-	-
	Vra10g0850	612	MobiDBLite	consensus disorder prediction	123	145	-	-
	Vra10g0850	612	Gene3D	Transferase(Phosphotransferase) domain 1	300	375	-	-
	Vra10g0850	612	MobiDBLite	consensus disorder prediction	75	95	-	-
	Vra10g0850	612	Gene3D	Transferase(Phosphotransferase) domain 1	448	572	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g0850	Vra-Chr10	14479824	14483965	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g0850	40	612	AGC Kinase Gene Family	AT5G47750	77.700	0.0	874

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vra10g0850		Pkinase	1.6e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g0850	K08286		-	gmx:100781600	1083.94