Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0832 ATGTACCCGAGGCTCATACACCCCCATGATGGAATTGTGGCGCAGGATGACATCCAGGCTGCTGCTTCCAACCTCTCTCACTCTCACAAGGGAGACCCTTGTCTCGTTCTCACTGCTGATCCCAAACCTCGCCTTCGTTGGACTCAGGACTTGCACGAACGATTCGTTGATGCCGTCACACAGCTTGGGGGAGCAAGTAAAGCTACACCAAAGGCAATCATGCGGACCATGAATGTCAAGGGTCTGACTCTGTTTCATTTGAAGAGTCATCTGCAGAAATACAGGCTTGGTAAGCAATCTGGGAAAGATGTTGGTGAAGGATGCAAAGATGGTTCATATCTTTTAGAAAGCCCTGGCACTGAGAACACTTCTCCAAAGCTGCCAACTTCCGACACAAACGAGGGATATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAGAGTAAGTTACATTTGCAAGTGGAGGCAGAGAAGCATTTGCAGATTCGGCAAGATGCAGAGAGGAGATACATGGCCATGCTTGAAAGAGCTTGCAAGATGTTGGCTGATCAATTTATTGGTGCTACAGTTATAGACACTGACAGCCAAAAGTTTCAAGCAATTGGAAGCAAAACACCTAGAGGTACTTTGGTTGATCCTCTTGGATTTTACTCCTTGCCATCAGCTGAGGTGGCCGGGGTGAATGTTCCAGATGAAGAAATAGCACCTAGTCTCCCACCCCAAAGGGCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAAAGTTCTGGAGGATTGACTTTAGAAGGATCTACCGGTGGGGGAAAAAGAAGGATGCTAGGCATGGACTCCATGGCAGCTCCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAGGCCATCAATGTGGCCCAAGGTAGTCATCCTCAAGGAATAACTAGGTATGGCATGTAG 942 0.4735 MYPRLIHPHDGIVAQDDIQAAASNLSHSHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGSYLLESPGTENTSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQAIGSKTPRGTLVDPLGFYSLPSAEVAGVNVPDEEIAPSLPPQRADCSTESCLTSHESSGGLTLEGSTGGGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGSHPQGITRYGM* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0832 313 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Vra10g0832 313 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 313 - -
Vra10g0832 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Vra10g0832 313 MobiDBLite consensus disorder prediction 116 131 - -
Vra10g0832 313 MobiDBLite consensus disorder prediction 100 132 - -
Vra10g0832 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Vra10g0832 313 MobiDBLite consensus disorder prediction 244 265 - -
Vra10g0832 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Vra10g0832 313 Gene3D - 41 99 - -
Vra10g0832 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 313 IPR044848 GO:0003700
Vra10g0832 313 MobiDBLite consensus disorder prediction 239 275 - -
Vra10g0832 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0832 Vra-Chr10 14310522 14317649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0832 31 255 G2-like Transcription Factor Family AT3G24120 47.899 1.47e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra10g0832 Myb_DNA-binding 5.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0832 - - gmx:100782369 587.415