Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0831 ATGTATCATCCAAAGAATGTTCCTAGTGCAAGTTTAGTTGGAGGTAGTTCATTAGTTCATGGTCAGCACATAGATTGTGGTGGCAGCGCAATGGATCCTGGCAATGGAGGAAATAGTCATAGCAACAACTCTAATCTTACCTCAAAACAACGACTACGGTGGACACATGAATTACACGAGCGCTTCGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTTAGAGTTATGGGTGTACAAGGATTGACCATTTACCATGTCAAAAGCCATTTACAAAAGTACCGACTAGCAAAATATTTACCGGATTCCTCATCTGATGGGAAAAAGGCTGACAAGAAAGAAACTGGGGATGTGCTTTCCAATCTCGATGGTTCATCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGGCTACATGAACAATTGGAGGTGCAGAGACAGCTACAATTGCGGATAGAAGCCCAGGGTAAATACCTGAAAAAGATAATCGAAGAACAACAGCGGCTCAGTGGGGTTCTTTCAGAGGCACCTGACACTGGGGTTGTGGCTGTGGTTCCAGGGGACGTGTGCCAAGAACCGGATAATAAGACCGACCCGTCTACCCCCGACCCGGAAAAGGCTGCCAAAGACCGTGTCCCAGCAAAGAGTCTTTCAATGGAATCTTTTTCATCACACCATGAACCATTGACTCCAGATTCTGGTTGCCATGTTGGTTCCCCTGCTGACAGCCCTAAAGGGGAGAGATCAACCAAGAAGCAACGGCTAAACATGGACGGATCGTATTCAAAGCCAGACATGGTTCTTCCACTTCAGATACTGGAGTCAAGCATGTCACAATACCAACATCCTAGCACTGTTTTTCTTGGCCAAGAGCAATTTGATCCTTCATTGGGTATGTCTACCAGAAGTGGTGAGGAATTGGATAAGGTTGGTGGCAGTAATCTGTGA 987 0.4661 MYHPKNVPSASLVGGSSLVHGQHIDCGGSAMDPGNGGNSHSNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDVLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPDTGVVAVVPGDVCQEPDNKTDPSTPDPEKAAKDRVPAKSLSMESFSSHHEPLTPDSGCHVGSPADSPKGERSTKKQRLNMDGSYSKPDMVLPLQILESSMSQYQHPSTVFLGQEQFDPSLGMSTRSGEELDKVGGSNL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0831 328 Gene3D - 48 107 - -
Vra10g0831 328 MobiDBLite consensus disorder prediction 211 226 - -
Vra10g0831 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 106 IPR017930 -
Vra10g0831 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 320 - -
Vra10g0831 328 Coils Coil 138 158 - -
Vra10g0831 328 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Vra10g0831 328 MobiDBLite consensus disorder prediction 109 131 - -
Vra10g0831 328 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Vra10g0831 328 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Vra10g0831 328 MobiDBLite consensus disorder prediction 200 276 - -
Vra10g0831 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 320 IPR044848 GO:0003700
Vra10g0831 328 MobiDBLite consensus disorder prediction 24 46 - -
Vra10g0831 328 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Vra10g0831 328 MobiDBLite consensus disorder prediction 304 328 - -
Vra10g0831 328 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0831 Vra-Chr10 14302031 14306228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0831 84 328 G2-like Transcription Factor Family AT2G01060 62.745 5.05e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra10g0831 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0831 - - gmx:100786925 559.681