Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0815 ATGGGTGAAAGAGCTCTAGTATTCCTACTACTATTTTTCACTCATTCGTTGATTGTACTAGCAAATACAGCAAATCAAGATTACACTGCTCTGCTGACTCTAATGAGTGAATGGGATAACACTCCACCTAATTGGGTGGGTTCAGATCCTTGCGGTGGCTGGGATGGCATTGAGTGTACAAATTCACGCATTACCTCCATATCATTAGCAAGCATGGCTTTGTCTGGTCAACTTACTTCAGATATTGGATTACTCTCTGAACTCGTGATCTTGGATCTGTCTTACAATAAGAATTTAACTGGACCACTTCCCGATAACATTGGAAAGTTGAGAAAGCTGAGAAACTTACTTCTTATTAACTGTGGTTTCACAGGTCCTATTCCAGCTACAATTGGAAATCTAGAACGGCTTGTCTTCCTATCTTTAAATTCGAATGGATTCACTGGTCCAATTCCAGCTGCCATTGGGAATCTCTCAAATGTGTATTGGCTAGACTTAGCTGAAAACCAGCTTGAAGGGCCCATCCCCATATCCAATGGAACTACTCCTGGTCTTGACATGATGTACAACACAAAGCATTTTCATTTTGGGGTGAATAAGCTTTCAGGAAACATACCTGCTGAACTTTTTAGCTCAAAAATGTCTCTCATTCATGTGCTTTTTGAAAGCAACCGATTTACTGGAAGCATTCCATCTACACTTGGCCTTGTCAAGTTTCTGGAGGTGGTCCGTTTTGATAACAACTTTTTTAGTGGGTCTTTGCCTGACAACATCAACAATCTTACAAGTGTTAGGGAACTGTTCCTGTCCAACAATCGCCTGTCTGGTTCCCTCCCAAACCTTACTGGAATGAGTTCCCTCCGTTACCTAGATGTGAGCAATAACAGTTTTGATCCATCAAACTTTCCACTGTCGTGGTCGACTCTTCCAGCATTGACGACAATAATGATGGAGAATACAAAACTTCAAGGAGCTATTCCTGTCTCTTTGTTCAACCTGCAACAGTTGCAGACAGTGGTGCTGAAAAACAACCAGCTAAATGGCACTTTAGATATTGGCACATCCATCAGCGATCAACTGGACCTCCTTGATTTGCAGATTAACTATATTGAAGAATTTAAACCACAAATCGACGTTTCTAAAGTGAAGATAATACTTTTGAATAATCCAATTTGCCAAGAGACAGGAGTTCCACAGAGTTATTGTTCCATAACAACATCTAACAACTCATATTCAACGCCACCACAAAACTGTGTACCTGTTCCCTGCAGCTTAGATCAGACATTAAGCCCCAAATGCAAATGTGCATACCCATATACAGGAACCTTAAATCTCAGAGCTCCTTCCTTCTCAGATTTGGCAAACGAGACTGTCTATGTAACCCTGCAGTTAAGTCTGATGCAGTCTTTTCAACAGAATGATATACCTGTTGATTCAGTTTCTTTAAGCAATCCAAGGAAGAACACGTATCAGTACCTTGAATTGACTTTAAAAGTATTTCCATCTGGCCAAGATCGTTTTAATCGAACTGGAATTTCCAGTGTAGCCTTTATTCTCAGCAACCAAACATACAAGCCTCCTTCAATGTTTGGACCATATTATTTTACTTCTGATGACTATGAAAACTTTATGAATGACACAGTACTAGAAGGTCCGGTGACAACATCTAGTAAATCTTCAAATACTGGCATCATAGCTGGCGCTGCGGCTGGTGGTGCTGCCCTATTGGTTTTAATACTTGTTATATTTGTGTATGCTCTCCACCGGAAGAATAAACCAGTAAAAGCAACTGGGAAACACAATCCTTTTGAACAATGGGGTCCGGATGATAGCAGTAGTAGCATCCCGCAGTTGAAAGGAGCAAGGTGCTTCAGTTTTGAAGAGATACAGAACTGCACCAAAAACTTCTCACAAGTCAATAATATAGGATCTGGGGGTTATGGGAAGGTTTATCGGGGAACTCTTCCCAACGGCCAGCTAATTGCAGTCAAGCGAGCTCAGAAGGAATCCATGCAGGGAGGGTTGGAGTTCAAAACCGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTTAGCCTTATTGGTTTCTGCTTCGAGCAAGGAGAACAAATGCTGATTTATGAGTACGTTGCAAATGGTACTTTGAAGGACACTCTTTTAGGGAAATCTGGAATCAGATTAGACTGGATTAGAAGGCTGAAAATAGCCCTTGGTGCTGCCAGGGGTCTGGACTATCTGCATGAACATGCCAATCCTCCAATCATACATAGGGACATCAAATCCACTAACATTTTACTGGATGAACGCTTGAATGCTAAAGTGTCTGATTTTGGTCTCTCCAAACCTTTAGGTGACGGTGCAAAAGGTTATATCACCACACAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAGTATTACATGACTCAACAGTTGACTGAGAAAAGTGATGTTTACAGCTTCGGTGTGCTAATGTTGGAGCTGATAACTGCAAGAAGGCCAATAGAGCGAGGGAAGTACATTGTGAAAGTGGTCAAGGGTGCTATAGACAAGACAAAAGGCTTCTATGGTCTCGAGGAAGTTCTTGATCCTACTCTTGAATTGGGGACATCATTGAATGGTTTTGAGAAGTTTGTGGATCTTGCCTTGCAATGTGTTGAAGAGTCAAGTTCTGACAGGCCTTCAATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTGGCCGGTTCAAGCCCCATTTTATCAGCATCAGTGTCCACTTCATCTAGTTATAACAATCCAACGAAGGGTAGTTCCCTCCATCCTTACGACAATGAATACTTTGATTCAAGTGTCATCCTTCCACGTCCATAA 2865 0.4147 MGERALVFLLLFFTHSLIVLANTANQDYTALLTLMSEWDNTPPNWVGSDPCGGWDGIECTNSRITSISLASMALSGQLTSDIGLLSELVILDLSYNKNLTGPLPDNIGKLRKLRNLLLINCGFTGPIPATIGNLERLVFLSLNSNGFTGPIPAAIGNLSNVYWLDLAENQLEGPIPISNGTTPGLDMMYNTKHFHFGVNKLSGNIPAELFSSKMSLIHVLFESNRFTGSIPSTLGLVKFLEVVRFDNNFFSGSLPDNINNLTSVRELFLSNNRLSGSLPNLTGMSSLRYLDVSNNSFDPSNFPLSWSTLPALTTIMMENTKLQGAIPVSLFNLQQLQTVVLKNNQLNGTLDIGTSISDQLDLLDLQINYIEEFKPQIDVSKVKIILLNNPICQETGVPQSYCSITTSNNSYSTPPQNCVPVPCSLDQTLSPKCKCAYPYTGTLNLRAPSFSDLANETVYVTLQLSLMQSFQQNDIPVDSVSLSNPRKNTYQYLELTLKVFPSGQDRFNRTGISSVAFILSNQTYKPPSMFGPYYFTSDDYENFMNDTVLEGPVTTSSKSSNTGIIAGAAAGGAALLVLILVIFVYALHRKNKPVKATGKHNPFEQWGPDDSSSSIPQLKGARCFSFEEIQNCTKNFSQVNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQMLIYEYVANGTLKDTLLGKSGIRLDWIRRLKIALGAARGLDYLHEHANPPIIHRDIKSTNILLDERLNAKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKGAIDKTKGFYGLEEVLDPTLELGTSLNGFEKFVDLALQCVEESSSDRPSMNYVVKEIENMLQLAGSSPILSASVSTSSSYNNPTKGSSLHPYDNEYFDSSVILPRP* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0815 954 Gene3D Ribonuclease Inhibitor 280 418 IPR032675 -
Vra10g0815 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Vra10g0815 954 SUPERFAMILY L domain-like 58 401 - -
Vra10g0815 954 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 935 - -
Vra10g0815 954 SMART serkin_6 636 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0815 954 Pfam Protein tyrosine and serine/threonine kinase 639 904 IPR001245 GO:0004672|GO:0006468
Vra10g0815 954 Gene3D Transferase(Phosphotransferase) domain 1 712 916 - -
Vra10g0815 954 Pfam Leucine Rich repeats (2 copies) 262 299 IPR025875 -
Vra10g0815 954 CDD STKc_IRAK 642 908 - -
Vra10g0815 954 PANTHER - 7 935 - -
Vra10g0815 954 SUPERFAMILY Protein kinase-like (PK-like) 622 932 IPR011009 -
Vra10g0815 954 Gene3D Ribonuclease Inhibitor 23 180 IPR032675 -
Vra10g0815 954 ProSitePatterns Protein kinases ATP-binding region signature. 642 664 IPR017441 GO:0005524
Vra10g0815 954 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Vra10g0815 954 ProSiteProfiles Protein kinase domain profile. 636 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0815 954 Gene3D Phosphorylase Kinase; domain 1 609 711 - -
Vra10g0815 954 Pfam Leucine rich repeat N-terminal domain 24 59 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0815 Vra-Chr10 14185632 14192707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0815 5 952 Receptor kinase-like Gene Family AT5G49760 57.143 0.0 1012
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vra10g0815 PK_Tyr_Ser-Thr 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0815 - - gmx:100780344 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2966 7 49618521 49625413 Vra10g0815 10 14185632 14192707 PCT