Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0814 ATGGGTGAAAGGATACTGATACCACTGTTGCTTTTCTTCAACTGTTTGCTCTTTGCAGTGGCACAAGATATTACCAAAGATCTTGAAGTCCTGAAGTCTCTGAGTGAGTCTTGGCAAGGCCAACTTCAAAACTGGGAGGGTTCAGATCCTTGCAGTTGGTATGGCATTAACTGCAGAAACTCACGAGTGGTTTCCATATCATTGACAGATATTGGTTTGACCGGCCAGCTTTCTGGAGATATAGGATCACTTTCTGAATTGGATAATCTGGATCTCTCAAACAATAGGGGCCTCACAGGACCACTTCCACGAGAAATTGGAAACTTGAAGAAGCTAACGAAACTAACTCTTGTTGGTTGTGGTTTTACTGGTCGTATTCCAGATGAAATAGGATCTCTGCAACAACTTGAAGTCTTATCTTTAAACTCCAACAATTTTGCTGGATCAATTCCACCTTCTATTGGCAATCTTTCAAATCTTACTTGGCTAGATTTAGCTGACAACCAGCTTGATGGATCCATCCCTGTATCTAGTGGCACTACCCCTGGTCTTGATATGTTACACAATGCATTGCACTTGTACATAATTCTCTTCAGCTTCCAGTTTTTCTTTATCAATGATTTTTCTTTATGCAATGAAAGGTGCATCCAACATATTTCTAATATTGTCTGCAGTCATCTCGGGAAGAATAGGCTTTCAGGACAAATTCCTCCGAAACTTTTTAGCTCGAAAATGACTCTGATACATGTGATTTTTCACTGCAATCTACTAGTTGGCAACATTCCTGAAACGCTTGGGCTAGTTACGAGTTTGACAGTGGTGCGCTTTGAAAATAATTCACTGAATGGACAACTGCCTCAGAGCTTCAACAACCTTATCAATGTCACAGACCTGTTGTTGTCCAACAATAAGCTGGAAGGTGCCATGCCAAACCTTACTGGGATGAACTCCCTGAGATACTTGGATCTAAGCAATAATAGCTTTGAAAAGTCAAACGTTCCACTTTGGCTTTCGAATCTGAAGAATTTAGTAACCTTACAAATGGAGAATTTGTACCTAATTGGAACCATTCCGAACTTTTTATTTAGCCTTGCCAATTTACAGAATGTTGTGCTGAAAGACAACCACCTTGGTGGAACCTTGGATATTGGCACCAACTATAGCAGACAACTGCGAGTTGTAGATTTGAGGTCAAATTCAATTCAGGATTATAAGCAATCAAATGATCCCCCACTTATCAGGATAATGCTCGCACACAACCCGATTTGCACTGAAAATGGAGCAGAAACTTTGCAGGATTACTGTACCAACCTGGATATCTTCGACACAAAACAACAAAATAACTGTCAACATGGTAGCTGCAGCCCAGATCAGACTCTCAGCCCCAACTGCAAATGTGGATATCCATATACAGGAACATTGACTTGCAGAGCCCCTTCCTATTTTGATTGGAGTAATACAACAAACCTGGAGGAAATTCTAATGAAGGAATTTCAATCTCATCATCTACCTGTTGATTCAGTTTCTTTAACCCTTTCAACTAAAGATCCATTTCGAGGTTTTGAGTTTATCATACAAATTTTCCCACTAGACCAAAATCATTTCAGCCAACAAGAGCAATCTAGTATAAGCTTCTTGCTTGGCAACCGAAGTGCATATAGTGCATTTGATTTTATTGCAGGAAACCATGTTGAAGGACCTAAGCAGTCAAGTAATTCATCAAGCACTGCAATAATTATTGGAGTAGCAATTGGAGGTTTTTCTCTTTTGCTAGTGTTATTAGGCCTGGCAGGTTTTTATGCTTTCCGCCAAAGGAGAAGGGCAGAAAGAGCAATATCTCGAAGCAATCCTTTTGGAAACTGGGATCCAAGTAAAAGCAATTGCGGCACCCCTCAGTTAAAAGCACCAAGGCAGTTCTCTTTTAAGGAAATTCAGAAATACACAAACAACTTCTCACAAGCCAATGATGTTGGATCAGGGGGTTATGGAAAGGTTTACCGGGGAACTCTTCCCACAGGGCAAGTTGTAGCCATAAAGCGAGCTCAAAAAGAGTCAAAACAGGGAGCGCAAGAATTCAAAGCCGAAATTGAACTCCTTTCCCGAGTCCACCACAAAAATCTGGTTAGCCTTGTGGGATTCTGCTTTGAACACGAAGAACAAATGCTGGTTTACGAGTTCGTTCCTAATGGAACTTTGAAAGATGCTCTCACTTGGAAACATAAAATCGCGATGAGCTGGAGCAGAAGGCTGAAAGTAGCCCTTGGTGCTGCCAGGGGTTTGGCTTATCTTCATGAACATGCTGATCCCCCTATTATACACAGGGACATCAAGTCAAACAACATCTTGCTAGATGAGAACTATAATGCTAAAGTTTCTGATTTCGGTCTCTCCAAGTCCATCTTAGATGATGATAAAGATCATGTTACCACTCAAGTTAAAGGAACAATGGTTTGTATATGGCTACTTGGATCCAGATTATTATACTAG 2487 0.4073 MGERILIPLLLFFNCLLFAVAQDITKDLEVLKSLSESWQGQLQNWEGSDPCSWYGINCRNSRVVSISLTDIGLTGQLSGDIGSLSELDNLDLSNNRGLTGPLPREIGNLKKLTKLTLVGCGFTGRIPDEIGSLQQLEVLSLNSNNFAGSIPPSIGNLSNLTWLDLADNQLDGSIPVSSGTTPGLDMLHNALHLYIILFSFQFFFINDFSLCNERCIQHISNIVCSHLGKNRLSGQIPPKLFSSKMTLIHVIFHCNLLVGNIPETLGLVTSLTVVRFENNSLNGQLPQSFNNLINVTDLLLSNNKLEGAMPNLTGMNSLRYLDLSNNSFEKSNVPLWLSNLKNLVTLQMENLYLIGTIPNFLFSLANLQNVVLKDNHLGGTLDIGTNYSRQLRVVDLRSNSIQDYKQSNDPPLIRIMLAHNPICTENGAETLQDYCTNLDIFDTKQQNNCQHGSCSPDQTLSPNCKCGYPYTGTLTCRAPSYFDWSNTTNLEEILMKEFQSHHLPVDSVSLTLSTKDPFRGFEFIIQIFPLDQNHFSQQEQSSISFLLGNRSAYSAFDFIAGNHVEGPKQSSNSSSTAIIIGVAIGGFSLLLVLLGLAGFYAFRQRRRAERAISRSNPFGNWDPSKSNCGTPQLKAPRQFSFKEIQKYTNNFSQANDVGSGGYGKVYRGTLPTGQVVAIKRAQKESKQGAQEFKAEIELLSRVHHKNLVSLVGFCFEHEEQMLVYEFVPNGTLKDALTWKHKIAMSWSRRLKVALGAARGLAYLHEHADPPIIHRDIKSNNILLDENYNAKVSDFGLSKSILDDDKDHVTTQVKGTMVCIWLLGSRLLY* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0814 828 Gene3D Ribonuclease Inhibitor 24 192 IPR032675 -
Vra10g0814 828 ProSitePatterns Protein kinases ATP-binding region signature. 657 679 IPR017441 GO:0005524
Vra10g0814 828 SUPERFAMILY L domain-like 31 199 - -
Vra10g0814 828 Pfam Protein tyrosine and serine/threonine kinase 654 812 IPR001245 GO:0004672|GO:0006468
Vra10g0814 828 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 221 816 - -
Vra10g0814 828 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 194 - -
Vra10g0814 828 ProSiteProfiles Protein kinase domain profile. 651 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0814 828 Pfam Leucine rich repeat N-terminal domain 27 58 IPR013210 -
Vra10g0814 828 SUPERFAMILY Protein kinase-like (PK-like) 629 816 IPR011009 -
Vra10g0814 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Vra10g0814 828 PANTHER - 9 194 - -
Vra10g0814 828 PANTHER - 221 816 - -
Vra10g0814 828 Gene3D Transferase(Phosphotransferase) domain 1 727 819 - -
Vra10g0814 828 Gene3D Phosphorylase Kinase; domain 1 623 726 - -
Vra10g0814 828 SUPERFAMILY L domain-like 206 437 - -
Vra10g0814 828 Gene3D Ribonuclease Inhibitor 203 447 IPR032675 -
Vra10g0814 828 SMART serkin_6 651 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0814 Vra-Chr10 14177773 14183713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0814 6 816 Receptor kinase-like Gene Family AT1G79620 45.911 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vra10g0814 PK_Tyr_Ser-Thr 2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0814 - - vra:106775737 1623.22