Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0804 ATGGGGGATCAGGGTGTTTTGGGTGTTAACGTTGGAAGAGAGGAGGAGGAAGATGAGTTCTGCAGTTGTTGTGGAGATGAAGACGAGGAAGCGTGGAAAGAGACCGAGGAAGCTGTGGTGGGAGGGTTGAAGGACGAGCTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGTTTGTCAATGGCTGGGGTTGAAAATCCAAGTTCTGGGTTTTCTGGAATTGGAGTTGTAATGGAAAGGTCCCCAGGGCTTCCTGCTATAAGGGTGCAGAAAAAACTTGACTTTTATGCGGAGGAGTCTGTGGTTGACTCTTTGGCACTCTTGGATGGTTTGCTGGAAGCTGTGCGGAAAAAGATCCGCAGGGTTTATGCTTTCACAGATTCCGAGTTGTTGCATGATCAGATAACATTTGGGAAGAAAATGGACATGCCTCTTTTGATGGCATTGAGAGAAAGGATTCTAGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCGTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTAGTCACTTTCCCCATAAATGGTGAGAGATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCTAATTATGATTACCCTGAAATGTTCGCACACATTCTGTTCACATTGCTTGAGGGCCTATGCCGATGGTAAAGTACAATCATCTCAAGTTCCTATAAAATGCCCTCAACCAGGGTGCAAGTATTGCATCTCTGCAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCATTTGAATCACTGGAGAAAGCTCTTTCCCAAGCCAATATTGACAATTCAGATAGAATTTATTGCCCATTTCCAAATTGTTCTGTTCTCCTTGATTCTCATGAATGTTTATCAGCTAGGGCAAGTTCATCAAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTCATCTGCGTGGACTGCAAAGTTCCTTGGCATTCTTCTATGAATTGTGTAGAATTCCAGAATCTGCCAGAGGACGAGAGGGATGCTTCTGACGTATCCTTGCACCGTCTTGCTCAAAATAAGAGGTGGAAGCGTTGTCAGCAATGTCGTACAGTGATTGAACTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACCGAGAAGGGCAACAAACATGCCAATGTGCATATTGGGATGAAAATAACTCAGAAAACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAACTCTCTCTCCATGATCGTGGATGCATACTCAGACCAGGAAAGATCACAGCTTGCGCTGATTCAGAGGTTTCTGGCCGGCGGTTTCAGTCTCAGTGACCACAATCCTTACCAGTCTCCTCCTCGCTGTACAGATTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAATGA 1545 0.4388 MGDQGVLGVNVGREEEEDEFCSCCGDEDEEAWKETEEAVVGGLKDELDEFSVKMFFKGLSMAGVENPSSGFSGIGVVMERSPGLPAIRVQKKLDFYAEESVVDSLALLDGLLEAVRKKIRRVYAFTDSELLHDQITFGKKMDMPLLMALRERILELANNFEDFVLKLIPSTDLEQPLHLAKVAIGLVTFPINGERLLKNCSICCDDKPVLIMITLKCSHTFCSHCLRAYADGKVQSSQVPIKCPQPGCKYCISATECRSFLPFTSFESLEKALSQANIDNSDRIYCPFPNCSVLLDSHECLSARASSSSQSDNSCIECPVCKRFICVDCKVPWHSSMNCVEFQNLPEDERDASDVSLHRLAQNKRWKRCQQCRTVIELTQGCYHMTCWCGHEFCYSCGAEYREGQQTCQCAYWDENNSENSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0804 514 ProSiteProfiles TRIAD supradomain profile. 196 414 IPR044066 -
Vra10g0804 514 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 513 - -
Vra10g0804 514 SUPERFAMILY RING/U-box 199 276 - -
Vra10g0804 514 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Vra10g0804 514 Gene3D - 337 462 - -
Vra10g0804 514 SUPERFAMILY Ribonuclease H-like 67 170 IPR012337 -
Vra10g0804 514 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Vra10g0804 514 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 513 IPR031127 GO:0004842|GO:0016567
Vra10g0804 514 SUPERFAMILY RING/U-box 352 416 - -
Vra10g0804 514 SMART ibrneu5 349 408 IPR002867 -
Vra10g0804 514 SMART ibrneu5 267 339 IPR002867 -
Vra10g0804 514 Pfam Reverse transcriptase-like 66 169 IPR002156 GO:0003676|GO:0004523
Vra10g0804 514 Pfam IBR domain, a half RING-finger domain 274 339 IPR002867 -
Vra10g0804 514 Pfam IBR domain, a half RING-finger domain 360 408 IPR002867 -
Vra10g0804 514 SMART ring_2 200 251 IPR001841 -
Vra10g0804 514 SMART ring_2 369 410 IPR001841 -
Vra10g0804 514 Gene3D - 52 186 IPR036397 GO:0003676
Vra10g0804 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 280 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0804 Vra-Chr10 14088735 14094646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0804 51 399 C3H Transcription Factor Family AT2G19610 25.627 3.46e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0804 - - gmx:100783040 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0804 10 14088735 14094646 Vra10g0804 10 14088735 14094646 ECH