Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0802 ATGGAAACTGGTGCTGGCGGTAGCCAAGCCCAACGAAGCGGTCACACCGCAAGAGGAATTCCGCCACCGCAACCGCCTGAGGAACCGAATCTGCGGCCAGAATGCCGAGGACCAAGTGGGACTGAGCCGGACCTCATTCTGCAACCTGAATGGCGCCGTCGAAGACCAAGCGCTCCTCCTTCCGAACCTTCCAACCGTGGCAGCGAAGAGGAAATTCTTCTTCAACCAGAATGGAGGCGCTCGAAGCCAAGCGCGAGTGCCAGTGCTAGTGCGAGTACTAGTGTTTGGGAACCCGAATGGAGACGATCGAGAACAAGTTCAACGGCATTTCCGTGGGACCAGAATTACAGTGTTCGCAAACCTAGTGCGTCCAGTGCCGTTGAAAGACGCGGTGACCCTAACGACCTTTGGCGAGCTGCTCTGGCTACAGATTCCGTTGTTCCCAAGCTGGAAAAACTACTAATATCAAAACAGTTACCTACATCAACTTGTACTCATGATAAAAGGGATAGAATATCACCTATTCAGAGACCTGATAATGGTGGCACGATAGCAATTCTAACTAGCAGACTCCGTGTCAACCATTTCCCTGTTAAGTTTGATCCAGAGCGTACCATAATGCATTATAGTGTTGGTGTCAAGCCTAAGGTTTCTTCAAAATTTGGTCAGCCTCAGAAATTATCAAAGTCTGAGCTATCCATGATCCGAGAGAAACTGTTTTCTGACGATCCTGAGAGGTTGCCCTTGGAGATGACTGCACATGACGGTGCAAAAAATATTTATAGTGCAGTACAATTACCAGAAGAGACCTATACTGTGGACATATCTGATGGAGAGGACGAAAAGATCATTTCGTATAGTGTTACATTAACTCTTGTTAATAAACTCAGGCTTTGCAAGCTAATGGACTATCTCAGTGGACATAACCTCTCCAATCCTAGGGATATTTTACAAGGTTTGGATGTGGTTGTGAAAGAGAATCCTGCTAGACGAACTGTTTCTGCAGGAGGACGCTATTATCCCACAAATCCTCCTGTAGTAATGAGGGATCTTCACCATGGGATAATGGCTGTTGGGGGATTTCAGCATAGTTTAAAGCCTACAGCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTTTTGGCTTTTCGGAAGGGAATGCCAGTCTTGGATTTCTTGCATGAGTGTATTGATAACTTTAAAGTGGATGAATTCGAAAAATTTAGGAAATGTGTTGAGGACGCACTTGTTGGATTGAAAGTCAGTGTGACTCATCGTAAAAGCAATCGGAAATACATTATTTCAAGATTAACTCCTATGATTACAAGGTATGTCACTTTTCCCATTGACAATACCGGTGGATGGAATCGCCCAAAGGATGTTAGTCTTCTTTCCTTTTTTAAAGACAAATATGGCAAGGAAATTATGTACAAAGATATTCCTTGTCTAGATTTAGGTAAAGACAAGAAGAACTATGTACCCATGGAATTCTGTGTTCTAGTTGAGGGCCAAAGATATCCCAAAGAACGTCTGGGTAGTATTTCTGCAAATACATTGAAAACAATGTCACTAGCTCACCCAAATGAGAGGGAGTGTGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGGGGTGGTTTTACTCAAAATTTTGGAATGAGTGTCAACACAACTATGACAACTATTGTAGGACGTGTACTTGGCCCTCCAGAATTAAAGTTAGGTGATCCAAATGGAGAGACCATTAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGATCAATGGTGGAAGGTAAATCAGTTGAGCATTGGGGCATTATTGATTTCACTAGTCTTGGGCCATTTAGGTACAAATTAAGAGGCAAGGATTTCATTCAAAAGCTTATAGGAAAATACAAGAAATTGGGTATATACATGCAGGAGCCCGTTTGGTATGAAGAATCTTCAATGAAGATACTTGCGAGTTATGATTTGCTATCTGAGTTACTTGAGAAAATTAACAACATTTGTAAATATAACCAAGTACACCTGCAATTTCTTATGTGTGTAATGGCTAAAAAAAGTTCCGGTTACAAGTACCTCAAATGGATTTCTGAGACCAAACTTGGGATAGTAACACAATGCTGCTTGTCTAACGGTGCTAATGAAGCAGAGGACAAATTTTATACCAATCTGGCTCTCAAGATCAATGCCAAACTTGGAGGCAGTAACGTGGAGCTCAGTAATGGGCTCCCTTACTTTGTGGGTGAAGGACATGTGATGTTTTTAGGGGCTGATGTAAACCATCCTGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTCGCTACCGTTAACTGGCCTGCTGCAAATCGTTATGCAGCACGTGTTTGCCCACAATACAATCGAAGTGAGAAAATACTGAGCTTTGGCGATGTTTGCCTTGAGCTTGTTTCATGCTATAGGAGTATGAATGGAGTTAGACCCGAAAGAATTGTTATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAACGAAGAACTGCTTGATTTGAAGAGAGCATTTCAAAGAGTAAACTACTTTCCAACAATCACTCTTATTGTGGCACAAAAACGACATCAAACTCGATTTTTTCCAGAGGGCTGGAGGGATGGATCTTCTAGTGGTAATATATTACCAGGAACAGTTGTGGACACAAAAGTTATACACCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTAGGTACAAGCAAGCCTACTCATTACCATGTTTTATGGGACGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTCATATACGAGATGTGCTTCACCTTTGCCAAGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTTTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAAGCCAACAAAAGATGCTTCCTCACTTTCACGAACCACTTCATTTGAACAGGGATTTTACGCACTGCATGCTGACCTACAAAACATAATGTTCTTTATCTAA 3081 0.4239 METGAGGSQAQRSGHTARGIPPPQPPEEPNLRPECRGPSGTEPDLILQPEWRRRRPSAPPSEPSNRGSEEEILLQPEWRRSKPSASASASASTSVWEPEWRRSRTSSTAFPWDQNYSVRKPSASSAVERRGDPNDLWRAALATDSVVPKLEKLLISKQLPTSTCTHDKRDRISPIQRPDNGGTIAILTSRLRVNHFPVKFDPERTIMHYSVGVKPKVSSKFGQPQKLSKSELSMIREKLFSDDPERLPLEMTAHDGAKNIYSAVQLPEETYTVDISDGEDEKIISYSVTLTLVNKLRLCKLMDYLSGHNLSNPRDILQGLDVVVKENPARRTVSAGGRYYPTNPPVVMRDLHHGIMAVGGFQHSLKPTAQGLSLCVDYSVLAFRKGMPVLDFLHECIDNFKVDEFEKFRKCVEDALVGLKVSVTHRKSNRKYIISRLTPMITRYVTFPIDNTGGWNRPKDVSLLSFFKDKYGKEIMYKDIPCLDLGKDKKNYVPMEFCVLVEGQRYPKERLGSISANTLKTMSLAHPNERECAIHKMVQSSDGPCRGGFTQNFGMSVNTTMTTIVGRVLGPPELKLGDPNGETIKLTVDLEKCHWNLAGRSMVEGKSVEHWGIIDFTSLGPFRYKLRGKDFIQKLIGKYKKLGIYMQEPVWYEESSMKILASYDLLSELLEKINNICKYNQVHLQFLMCVMAKKSSGYKYLKWISETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYFVGEGHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILSFGDVCLELVSCYRSMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRAFQRVNYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPKPTKDASSLSRTTSFEQGFYALHADLQNIMFFI* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0802 1026 SMART DUF1785_2 333 386 IPR014811 -
Vra10g0802 1026 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 73 1025 - -
Vra10g0802 1026 MobiDBLite consensus disorder prediction 1 15 - -
Vra10g0802 1026 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 73 1025 - -
Vra10g0802 1026 Pfam PAZ domain 391 517 IPR003100 GO:0005515
Vra10g0802 1026 Pfam N-terminal domain of argonaute 190 324 IPR032474 -
Vra10g0802 1026 SMART PAZ_2_a_3 387 524 IPR003100 GO:0005515
Vra10g0802 1026 MobiDBLite consensus disorder prediction 81 103 - -
Vra10g0802 1026 Gene3D - 753 1026 IPR036397 GO:0003676
Vra10g0802 1026 Gene3D paz domain 381 506 - -
Vra10g0802 1026 CDD PAZ_argonaute_like 387 501 - -
Vra10g0802 1026 Pfam Piwi domain 687 981 IPR003165 GO:0003676
Vra10g0802 1026 ProSiteProfiles Piwi domain profile. 686 985 IPR003165 GO:0003676
Vra10g0802 1026 Pfam Argonaute linker 1 domain 337 385 IPR014811 -
Vra10g0802 1026 Gene3D - 568 748 - -
Vra10g0802 1026 CDD Piwi_ago-like 549 983 IPR045246 -
Vra10g0802 1026 ProSiteProfiles PAZ domain profile. 387 502 IPR003100 GO:0005515
Vra10g0802 1026 MobiDBLite consensus disorder prediction 1 103 - -
Vra10g0802 1026 SUPERFAMILY Ribonuclease H-like 673 985 IPR012337 -
Vra10g0802 1026 SUPERFAMILY PAZ domain 382 540 IPR036085 GO:0005515
Vra10g0802 1026 SMART Piwi_a_2 686 984 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0802 Vra-Chr10 14073251 14077837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0802 191 985 Eukaryotic Initiation Factors Gene Family AT1G48410 35.894 4.11e-146 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0802 K11593 - gmx:100783571 1774.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0802 10 14073251 14077837 Vra10g0802 10 14073251 14077837 ECH