Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0799 ATGGCTGCTTATTCAGCCGAACCCTCATCTTCTTTGAGCTTCACATCATCTTCCCATTTATCAAATGGCTCAGTTAGTCACAACATTTGCTCTTCTTACGGCTCTGACCCTGGACCTAACCTTGAGGTTATCAGTTTGAGTAAGCTTAGCTCCAGCTTGGAGCAGCTTTTGATTGAATCTGATTGTGATTATAGTGATGCTGACATCATTGTAGAAGGAATCCCAGTTAGTGTTCATCGATGTATTCTGGCCTCTAGAAGCAAGTTTTTCCATGAATTATTCAAGAGAGAGAAGGGGACATCAGAAAAAGAAGGGAAGTTGAAGTATAACATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATATTCCTGGGTTATGTATATACTGGTAAACTCAAGCCCTCTCCAATGGAGGTGTCTACATGTGTTGACAATGTATGTGCCCATGATGCCTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGCGACGTCTACTTAACTTTATAGGAAAGGCTCTTGTGGAAGATGTGATTCCAATCCTTACCGTTGCTTTCCATTGTCAATCGAGTCAACTTGTGACTCAATGTATTGATAGGGTGGCCAGATCAGACCTTGACCAGATTTCAATTGACAAAGAGCTTCCGCATGAACTCTCAGGAAAAGTGAAACTGCTCCGCCAAAACCCTCAGCAAGACCTTGAAAATGATACATCTGCATTGGATGCTTTGTCTCTGAAACGAATCACTAGAATACACAGGGCATTGGACTCCGATGATGTTGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACTTTAGACGAAGCTCATGCTCTTCATTATGCTGCAGCCTATTGTGACCCCAAGGTTGTTTCCGAGGTACTTAGTTTGGGACTGGCTAATGTTAATCTTCGGAATTCTCGAGGTTACACAGTCCTTCATATTGCTGCCATGCGGAAAGAAGCTTCTATTATAGTATCGCTGCTTACAAAAGGGGCTTGTGCATCAGATGTGACTTTTGACGGTCAGAGTGCTGTTAGTATTTGTAGAAGGTTGACGAGGCCAAAGGATTATCATGCGAAAACAGAACAGGGGAAAGAAACAAACAATGATCGGATATGCATCGATGTTCTCGAAAGAGAAATGCGGAGGAATCCACTGGCTGGAGAGTCCGGTATCTCTTCCCATGCCATGGCCGATGACCTCCACATGAAACTACTATACCTTGAAAACAGAGTGGCATTTGCAAGGCTTTTCTTCCCTTCAGAGGCGAAACTAGCCATGGACATTGCGCATGCTGAGACAACATCCGAGTTTGCTGGTCTCTCTGCATCAAACTCAAAAACTTCAAACGGCAACTTGAGGGAGGTTGATCTGAATGAGACTCCCATAGTGCAAAATAAAAGACTTCTTTCTAGAATGGAGGCCCTGATGAAGACAGTGGAAATGGGGCGGCGGTACTTCCCTCACTGCTCGGAAGTGCTGGACAAGTTCATGGAGGATGACCTACCAGACTTGTTTTATCTAGAAAAGGGTACTCAAGAAGAGCAGAGAATCAAAAGAACACGGTTCATGGAGCTGAAAGATGATGTCCACAAGGCCTTCAGCAAGGACAAGGCCGAGTTTAGCCGCTCTGGCATTTCATCTTCATCCTCTTCATCTTCCCTCAAAGATTCTGTTGTACATTACAGGGCTAGGAAAGTGTAA 1776 0.4369 MAAYSAEPSSSLSFTSSSHLSNGSVSHNICSSYGSDPGPNLEVISLSKLSSSLEQLLIESDCDYSDADIIVEGIPVSVHRCILASRSKFFHELFKREKGTSEKEGKLKYNMSDLLPYGKVGYEAFLIFLGYVYTGKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFIGKALVEDVIPILTVAFHCQSSQLVTQCIDRVARSDLDQISIDKELPHELSGKVKLLRQNPQQDLENDTSALDALSLKRITRIHRALDSDDVELVKLLLNESDITLDEAHALHYAAAYCDPKVVSEVLSLGLANVNLRNSRGYTVLHIAAMRKEASIIVSLLTKGACASDVTFDGQSAVSICRRLTRPKDYHAKTEQGKETNNDRICIDVLEREMRRNPLAGESGISSHAMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSASNSKTSNGNLREVDLNETPIVQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRTRFMELKDDVHKAFSKDKAEFSRSGISSSSSSSSLKDSVVHYRARKV* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0799 591 Pfam Ankyrin repeats (3 copies) 274 356 IPR002110 GO:0005515
Vra10g0799 591 SMART ANK_2a 268 296 IPR002110 GO:0005515
Vra10g0799 591 SMART ANK_2a 331 363 IPR002110 GO:0005515
Vra10g0799 591 SMART ANK_2a 297 327 IPR002110 GO:0005515
Vra10g0799 591 MobiDBLite consensus disorder prediction 565 582 - -
Vra10g0799 591 ProSiteProfiles BTB domain profile. 65 141 IPR000210 GO:0005515
Vra10g0799 591 ProSiteProfiles Ankyrin repeat profile. 331 356 IPR002110 GO:0005515
Vra10g0799 591 Pfam NPR1/NIM1 like defence protein C terminal 373 577 IPR021094 -
Vra10g0799 591 Gene3D - 265 405 IPR036770 -
Vra10g0799 591 SUPERFAMILY Ankyrin repeat 261 374 IPR036770 -
Vra10g0799 591 ProSiteProfiles Ankyrin repeat region circular profile. 331 356 - -
Vra10g0799 591 SUPERFAMILY POZ domain 51 190 IPR011333 -
Vra10g0799 591 MobiDBLite consensus disorder prediction 559 591 - -
Vra10g0799 591 Pfam BTB/POZ domain 63 180 IPR000210 GO:0005515
Vra10g0799 591 PANTHER REGULATORY PROTEIN NPR3 11 578 - -
Vra10g0799 591 PANTHER REGULATORY PROTEIN NPR3 11 578 IPR044292 GO:0009862|GO:2000022|GO:2000031
Vra10g0799 591 CDD BTB_POZ_NPR_plant 58 191 - -
Vra10g0799 591 SMART BTB_4 65 191 IPR000210 GO:0005515
Vra10g0799 591 Gene3D Potassium Channel Kv1.1; Chain A 40 223 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0799 Vra-Chr10 14049538 14053025 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vra10g0799 NPR1_like_C 2.2e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0799 K14508 - gmx:100217338 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0799 10 14049538 14053025 Vra10g0799 10 14049538 14053025 ECH