Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0786 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACCGTTCCTTCCGCCGCCGCCGCCCCTTCCGGTCCGCTCGTCCAACACGACTCTTCCGCTGCCGCTTCCGCTGTGTCCAACGGAGGCCCTCCCGCCCCGGTCCCCTCCACAGCCGACCCCGCAGCCGTCAACGTTCCCGGCCGACGGAGCTTTCGGCAGACGGTATGCCGGCACTGGCTGCGTAGCCTGTGCATGAAGGGCGACGCGTGTGGGTTTCTGCACCAGTACGACAAGGCGCGAATGCCTGTTTGCCGATTCTTCAGGCTCTATGGAGAGTGTCGGGAACAGGATTGCGTGTATAAACACACGAACGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAGAAGATCCAACATTTATATTCCTACAATTATAATTCATCTAACAAATTTTTCCAGCAAAGGGGTTCTAGCTATGCCCAACAAGCTGAAAAATCCCAACTTCCTCAAGGAACAAACTCTACAAATCAAGTTGTGACTGGAAAACCATTGCCAGCAGAGTCAGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAGTCAAATGCAAAATGTTGCTAATGGCCAGCCTAATCAAGCCAGTAGATCTGCTACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTNTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGTAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAACTTCTCAGTTAAATGGTTGAAGTTATGTGAACTGTCTTTCCACAAAACCCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGAGAGCAACTGGCATCATTGCTTTATCTTGAGCCAGATGGTGAACTTATGGCCGTTTCAGTCGCAGCGGAGTCTAAACGGGAAGAAGAAAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCATGGTGTAGGGCCAGCTGGTCAAGGCAGGGGTAGGGGCAGAGGTATGATGTGGCCACCTCACATGCCCCTTGGGCGTGGAGCCCGACCCATGCCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGTTATCCTATGGGCCAGTTGCACCTGATGGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGTGCTTTTGCACCATACGGTCCCAGGTTCTCTGGTGATTTTGGAGGTCCTCCAGCAGCCATGATGTTTCGAGGGCGACCTTCTCAACCAGGGATGTTTCCAGGTGGTGGTTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTCATGGGGGGGATGGGGGTTGCAGGGGCAAATCCAGCAAGAGGTGGTAGGCCGGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCTTACCTCAGAACACAAACCGTCTGGCCAAAAGAGATCAAAGAGCTACTGATAGAAATGATAGGTATGGTTCGGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCTGATGATGACACGCAGTATCAGCAAGGATACAAAGCCAACCAGGATGAACATCCTGCTGTCAACAACTTCCGGAATGATGACAGTGAAAGTGAGGATGAAGCACCTAGGAGGTCAAGACATGGAGAGGGGAAAAAGAAAAGGCGGGGCCCAGAAGATGTCAATACAAACTATAATCATTAG 2091 0.4921 MEDSEGVLSFDFEGGLDTVPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPVPSTADPAAVNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSSYAQQAEKSQLPQGTNSTNQVVTGKPLPAESGNAQPQQQVQQSQQQVSQSQMQNVANGQPNQASRSATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSXENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPARGGRPVNMPPMFPPPPPLPQNTNRLAKRDQRATDRNDRYGSGSEQGKSQDMLSQSGAPDDDTQYQQGYKANQDEHPAVNNFRNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0786 696 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Vra10g0786 696 MobiDBLite consensus disorder prediction 585 600 - -
Vra10g0786 696 MobiDBLite consensus disorder prediction 404 483 - -
Vra10g0786 696 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 691 IPR045168 -
Vra10g0786 696 SUPERFAMILY CCCH zinc finger 67 98 IPR036855 GO:0046872
Vra10g0786 696 MobiDBLite consensus disorder prediction 181 251 - -
Vra10g0786 696 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 691 - -
Vra10g0786 696 Pfam YT521-B-like domain 257 319 IPR007275 GO:0003723
Vra10g0786 696 Pfam YT521-B-like domain 336 391 IPR007275 GO:0003723
Vra10g0786 696 Gene3D ph1033 like domains 235 395 - -
Vra10g0786 696 MobiDBLite consensus disorder prediction 406 420 - -
Vra10g0786 696 Gene3D - 62 125 - -
Vra10g0786 696 MobiDBLite consensus disorder prediction 657 690 - -
Vra10g0786 696 MobiDBLite consensus disorder prediction 431 449 - -
Vra10g0786 696 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Vra10g0786 696 SMART c3hfinal6 67 93 IPR000571 GO:0046872
Vra10g0786 696 SMART c3hfinal6 123 147 IPR000571 GO:0046872
Vra10g0786 696 MobiDBLite consensus disorder prediction 1 58 - -
Vra10g0786 696 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Vra10g0786 696 MobiDBLite consensus disorder prediction 606 620 - -
Vra10g0786 696 ProSiteProfiles YTH domain profile. 257 392 IPR007275 GO:0003723
Vra10g0786 696 MobiDBLite consensus disorder prediction 571 696 - -
Vra10g0786 696 MobiDBLite consensus disorder prediction 621 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0786 Vra-Chr10 13918228 13929509 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra10g0786 YTH 2.3e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0786 K14404 - gmx:100802826 1194.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0786 10 13918228 13929509 Vra10g0786 10 13918228 13929509 ECH