Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0780 ATGAGTTCTTTCAGTGTTTTCACAGTGAAAGTAACACTTTTCTGTGTGGTGGTTTTGCTTGCAGCATCACAACCCTTCTCAAATGCACAGCTTGATAACTCTTTTTACAGAGACACATGTCCGAGGGTGCATTCTATTGTTCGTGAGGTTCTCAGAAATGTTTCAAAATCTGATCCTCGTATTCTCGCCAGTCTCATAAGACTTCACTTCCATGATTGCTTTGTTCAGGGTTGTGATGCATCAGTTCTTTTGAACAGCACTGATACCATCGTGAGTGAACAAACAGCAGCGCCGAATAACAACAGCTTAAGAGGTTTGGACGTTGTGAATCAGATCAAGACAGCAGTAGAAAATGCTTGCCCTGGCATTGTTTCTTGTGCTGATATTCTTGCTCTTGCAGCTGAGATATCTTCTGTTCTGGCTCATGGTCCCGATTGGAAAGTTCCTCTGGGAAGAAGAGACAGTTTAAACGCAAGTTTTGATCTTGCCAATCAAAATCTTCCTGGTCCTAATTTCTCCCTCGACCAACTGAAATCTGCATTTGAAAGACAAAACCTTAACACAACCGATCTAGTTGCACTTTCAGGTGCTCATACAATTGGCAGAGCTCAATGCAGATTTTTTGTGAATAGATTATACGATTTCAACAGCACTGGAAACCCTGACCCAACTCTTAACACAACCCTGTTACAAGCACTTCGAGCAATTTGCCCCAATGGTGGACCTGGAACCAATCTCACAAACTTGGACCTAAGCACACCTGATAGACTTGACTCTAACTACTACTCCAATCTTCAACTTCAAAATGGCTTGCTTCGAAGTGATCAGGAGTTGTTTTCCACCATTGGTGCAGATACCATTCCCATCGTCAACAGCTTCAGCAGTAACCAGACTCTTTTCTACGAAAATTTTAAGGCTTCAATGATAAAAATGAGTACCATACAAGTGCTCACAGGAACACAGGGAGAGATTCGAGCACATTGTAACTTTGTCAATGGAAACTCAGCTACTTTAACTACTCTACCCACCCAACAATCTTCAGAAGATGGTGTTGTCAGCTCTATCTAA 1068 0.4204 MSSFSVFTVKVTLFCVVVLLAASQPFSNAQLDNSFYRDTCPRVHSIVREVLRNVSKSDPRILASLIRLHFHDCFVQGCDASVLLNSTDTIVSEQTAAPNNNSLRGLDVVNQIKTAVENACPGIVSCADILALAAEISSVLAHGPDWKVPLGRRDSLNASFDLANQNLPGPNFSLDQLKSAFERQNLNTTDLVALSGAHTIGRAQCRFFVNRLYDFNSTGNPDPTLNTTLLQALRAICPNGGPGTNLTNLDLSTPDRLDSNYYSNLQLQNGLLRSDQELFSTIGADTIPIVNSFSSNQTLFYENFKASMIKMSTIQVLTGTQGEIRAHCNFVNGNSATLTTLPTQQSSEDGVVSSI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0780 355 PANTHER PEROXIDASE 10 340 - -
Vra10g0780 355 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vra10g0780 355 ProSiteProfiles Plant heme peroxidase family profile. 30 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 Pfam Peroxidase 47 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PANTHER PEROXIDASE 72-RELATED 10 340 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 CDD secretory_peroxidase 30 331 IPR033905 GO:0004601|GO:0042744
Vra10g0780 355 Gene3D Peroxidase, domain 2 168 311 - -
Vra10g0780 355 SUPERFAMILY Heme-dependent peroxidases 30 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 Gene3D - 35 332 - -
Vra10g0780 355 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra10g0780 355 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0780 Vra-Chr10 13857676 13860803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0780 13 353 Peroxidase AT5G06730 57.143 2.54e-133 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0780 K00430 - gmx:106796332 583.178