Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0770 ATGCCTAATTTTCATTCATCTTCTTCTTTTCTTCTTTCATCATTCATGGTGGCCATTCTCATTTCTTGCATCTCACATTCTGCCCTTGCTAGTAATCATGGAGCAATAATCGCCGACTCTCCTATGTTGACGAGCAAGTTAGGAATCAATCGTACTATCAAAGTAGACATGAATGGCCAGGGGGACTTCACAAGAGTCCAAGATGCCATAGATTCCATTCCTGAAGAAAATTCTCAGTGGGTAATCGTTCATGTCAGGAAAGGACTGTACAGAGAAAAGGTGCGCATACATAATAAGCCTTATATATTCCTGAGAGGGAATGGGCGAGGAAGAACTTCCATAACATCGTCTCAGAGCTCTACAGACAACGTGGCTTCTGCCACCTTCAGAGTCGAAGCACATGACGTCATTGTCTTTGGAATTAGCTTCCAGAATGAGGCACCTACGGGGGTTGCTTATACCTCGCAAAACCAATCGGTGGCAGTATATGTGGCAGCAGATAAAGTGGCATTTTATCATTGTTCATTTTACAGTACTCACAACACTCTTTTTGATCAAAGAGGAAGACACTACTATGCTAATTGCTACATTCAAGGGTCAATTGATTTCATATTTGGTCGTGCCAGAACAATCTTCTATAATCCTGAAATATTTGTGATAGATGATAAAAGGTTAAAGATTCGAGGTTCAATCACGGCTCATAATAGGGAAAATGCAGATGAGCTGAATGGATATATCTTCATCAAAGGAAAGGTTTATGGCATTGGTTCAGTTTACCTAGGAAGGGCGAAGGGTTCTTATTCTAGGGTGATTTTTGCTGAGACATATCTGTCCAAGACCATTGTCGCTGCGGGGTGGACCAATTGGAGCCATGATGGTAGCACAGAAAATATGGTCCATGCGGAGTACAATACCCGTGGACCTGGTGCTGTAAAGGATGGACGTGCTCCTTGGTCGCTGCAGCTAACTAAGCAAGAAGTTGAGCCCTTTTTATCCATTGATTATATTGATGGCAAAAATTGGTTGCCAGTATGGTTGTAA 1041 0.4217 MPNFHSSSSFLLSSFMVAILISCISHSALASNHGAIIADSPMLTSKLGINRTIKVDMNGQGDFTRVQDAIDSIPEENSQWVIVHVRKGLYREKVRIHNKPYIFLRGNGRGRTSITSSQSSTDNVASATFRVEAHDVIVFGISFQNEAPTGVAYTSQNQSVAVYVAADKVAFYHCSFYSTHNTLFDQRGRHYYANCYIQGSIDFIFGRARTIFYNPEIFVIDDKRLKIRGSITAHNRENADELNGYIFIKGKVYGIGSVYLGRAKGSYSRVIFAETYLSKTIVAAGWTNWSHDGSTENMVHAEYNTRGPGAVKDGRAPWSLQLTKQEVEPFLSIDYIDGKNWLPVWL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0770 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 345 - -
Vra10g0770 346 Pfam Pectinesterase 54 338 IPR000070 GO:0030599|GO:0042545
Vra10g0770 346 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Vra10g0770 346 Gene3D - 47 345 IPR012334 -
Vra10g0770 346 PANTHER PECTINESTERASE 67-RELATED 11 345 - -
Vra10g0770 346 SUPERFAMILY Pectin lyase-like 49 344 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0770 Vra-Chr10 13735298 13736954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0770 50 342 Carbohydrate Esterase AT5G47500 35.855 1.31e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0770 - - gmx:100792967 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0770 10 13735298 13736954 Vra10g0770 10 13735298 13736954 ECH