Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0767 ATGCTCCAGGCATTGATGAGTCTTATCGCGCGCTGTTGGAAACCGTTCGGGCTCGGTGACGACGCCAATGCCGGAAGAGAATGTAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTCGCCGCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGGCCCTTCGGCACCTTCGTCGGAGTCTACGACGGCCACGGCGGCCCCGATTGTTCGCGTTATGTTTGTGATAACTTGTTCCGTAATCTCCAAGCGATATTGGCCGAGTCACATAGTGTTGTGACTTCTGAGGTCATTCAGCAGGCGTTCCGGCGGACCGAGGAGGGATTCACGGCGCTTGTTTCAGAGTTGTGGAGCTCCCGGCCGCAAATTGCAACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGCAACACTGGTGGGATGGCTGCAATGCAGCTGTCCACCGAGCACAACGCGAATATTGAGGCTGTTAGGCAGGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTGAGACATGGAGTGTGGAGAGTCAAGGGCATAATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCTGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTGTTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCGTCAGATGGTTTATGGGAGCACCTAAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTACAAGAAGCGGCAAGAAAACGTGAAATGCGATATTCAGACCTTTATAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATACGCCACTCACAGTTCGAAGTGCTCTCGATCACTGA 1110 0.5063 MLQALMSLIARCWKPFGLGDDANAGRECKDGLLWFRDIGRFAAGDFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPDCSRYVCDNLFRNLQAILAESHSVVTSEVIQQAFRRTEEGFTALVSELWSSRPQIATTGTCCLVGVICRQTLFVASLGDSRAVLGRRVGNTGGMAAMQLSTEHNANIEAVRQELKELHPDDPQIVVLRHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTVISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLIKAALQEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNTPLTVRSALDH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0767 369 Pfam Protein phosphatase 2C 70 315 IPR001932 -
Vra10g0767 369 CDD PP2Cc 46 346 IPR001932 -
Vra10g0767 369 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Vra10g0767 369 Gene3D - 39 354 IPR036457 -
Vra10g0767 369 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 369 - -
Vra10g0767 369 SUPERFAMILY PP2C-like 54 347 IPR036457 -
Vra10g0767 369 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
Vra10g0767 369 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
Vra10g0767 369 SMART PP2C_4 39 344 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0767 Vra-Chr10 13718677 13726402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0767 1 366 PP2C-type Phosphatase Gene Family AT4G38520 59.631 8.37e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0767 K01102 - gmx:100813333 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0767 10 13718677 13726402 Vra10g0767 10 13718677 13726402 ECH
Vra7g2763 7 47906824 47910425 Vra10g0767 10 13718677 13726402 PCT