Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0760 ATGGCGGAGGAGAAAAGAGAGGAAGAAGCGCACCCCAACAACGAACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAATAACTTCACTTTCCCTTCCCAACCACTCACCATCTTCGACGCCATGCCGCCGCCGCCTTTCTCTTCTTCCTGCGACATCAAGGTCTCGCCCTTCGGCTTCCTCGACCTGCTCGGCGTGCACGACTACCACGCTCCGCTGTTCGATTGGCCCCCCTCCGCTGCGCCGTCGCGGGCGAGCTCCAACGTGCCGGACTCCTCCGAGGTGCTGAACACTCCCGCGTCGCCCAACTTGTCGTCGATTTCGTCGTCTTCGAATGAGGCCACCGCCACCGCCACGACCACCACCAGGGCGGAGCAGAGTGGTAAAGGTGGGTTTGAACACGAGGAAGCCGAGGCAGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGAGGACCAGGATCAAGACAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCAAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCACCGGTTGCGGCGTAAAGAAGCGAGTGGAGCGTTCCTCCGACGACCCTTCCATCGTGGTTACCACTTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCTCGGGCCAGCTTCGGGTTCGTGAACGAGCCTGGAGGGTTGGGACATTCCGGCTCCTCACACTTGGTGCTGCCACATCAACACCAACAGCAACACCTACACCAACCACAAGCTTCGGCTTTGATATATAACTCCAACTCTCCTTTTGTAAACTCCGGCAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCATCAGGAGCACGCGAACCGTCGAGGATTCGGGCACGAGGCTTTGTTGAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAATGATTGA 1065 0.5568 MAEEKREEEAHPNNEPSTTMAFSDEIPNNFTFPSQPLTIFDAMPPPPFSSSCDIKVSPFGFLDLLGVHDYHAPLFDWPPSAAPSRASSNVPDSSEVLNTPASPNLSSISSSSNEATATATTTTRAEQSGKGGFEHEEAEAEEEEEGGNGGREDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTTGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRASFGFVNEPGGLGHSGSSHLVLPHQHQQQHLHQPQASALIYNSNSPFVNSGSNFMNTTSFGGFGHQEHANRRGFGHEALLRDNGLLQDIIVPSQVRKEEND* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0760 354 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0760 354 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0760 354 MobiDBLite consensus disorder prediction 81 179 - -
Vra10g0760 354 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0760 354 MobiDBLite consensus disorder prediction 14 36 - -
Vra10g0760 354 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0760 354 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0760 354 MobiDBLite consensus disorder prediction 1 38 - -
Vra10g0760 354 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 345 IPR044810 GO:0003700
Vra10g0760 354 MobiDBLite consensus disorder prediction 82 128 - -
Vra10g0760 354 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 80 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0760 Vra-Chr10 13651211 13654177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0760 159 351 WRKY Transcription Factor Family AT5G49520 53.398 8.59e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra10g0760 WRKY 4.4e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0760 - - gmx:100812252 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0760 10 13651211 13654177 Vra7g2758 7 47837200 47839496 PCT