Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0743 ATGGAAGTGAAAGGAAGGGTAGGGAACTCCCCAAGCACCATAGTCCAAAGTGACGATGAGATGGACCTTCGAAGAGGTCCTTGGACCGTCGATGAAGACCTTGCTCTCATCAATTACATTGCCAATCACGGAGAAGGTCGATGGAATTCCCTTGCACGTTCTGCCGGACTCAAACGAACTGGCAAGAGTTGCAGATTGAGATGGTTGAATTATCTTCGTCCTGATGTTCGTCGTGGCAACATCACTCTTGAAGAACAGCTTCTCATTCTCGAGCTCCATGGTCGCTGGGGAAACCGATGGTCTAAAATTGCCCAATACTTGCCTGGAAGAACTGATAACGAGATCAAGAATTACTGGAGAACTCGTGTTCAAAAGCACGCCAAACAGCTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTCTGGATGCCGAGGCTGGTGGAACGCATTCAAGCCGCCGCCGCCGCCACCACCGCTGCGGCCGCCGTCCGTTCTCCCACGGCTTCTGCCAGTGCTACTACAACCATCACCACCAACAACAATATAACATACAACTACAGCAACAACAACAACCTTAACAACAGTTTTGAGGTGCACAGTGGGGAGATGATGTTGAGTCCAGCAATTATGAACAGCAACTTCGGTGGTTCACAAAGTTACACTCCAGAGAATAGTAGCACGGGTGCATCATCTGACTCGTTTGGAACTCAGGTTTCACCTGTCTCGGAGTTGGCTCAGGATTACTACAATAATGTCACAGTTAGTAACAGTAACAGTAACAATAACCCTAATCCTGATTACTACCAACAAGCACAAGACCAACTCAGTTTTTTGGATTGCATCACAAGCCCATCGGGGTTGTTCTCTCAGCAGTTGGATTTCCATTCCATGGAACAAAACACCCCATGGATTCAGAGTAACGGGGACGCATCCAACGGTTTCTGGAACGTTGAAAACATGTTGCTGTTCCAACAACTCACTGACAACATGTGA 1008 0.4782 MEVKGRVGNSPSTIVQSDDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAATTAAAAVRSPTASASATTTITTNNNITYNYSNNNNLNNSFEVHSGEMMLSPAIMNSNFGGSQSYTPENSSTGASSDSFGTQVSPVSELAQDYYNNVTVSNSNSNNNPNPDYYQQAQDQLSFLDCITSPSGLFSQQLDFHSMEQNTPWIQSNGDASNGFWNVENMLLFQQLTDNM* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0743 335 Gene3D - 82 145 - -
Vra10g0743 335 MobiDBLite consensus disorder prediction 221 242 - -
Vra10g0743 335 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Vra10g0743 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Vra10g0743 335 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Vra10g0743 335 PANTHER MYB TRANSCRIPTION FACTOR 2 332 - -
Vra10g0743 335 CDD SANT 27 72 IPR001005 -
Vra10g0743 335 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Vra10g0743 335 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Vra10g0743 335 SMART sant 77 125 IPR001005 -
Vra10g0743 335 SMART sant 24 74 IPR001005 -
Vra10g0743 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Vra10g0743 335 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 332 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra10g0743 335 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Vra10g0743 335 CDD SANT 93 121 IPR001005 -
Vra10g0743 335 Gene3D - 22 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0743 Vra-Chr10 13503512 13505953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0743 18 322 MYB Transcription Factor Family AT3G06490 52.484 7.64e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra10g0743 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0743 K09422 - gmx:100305347 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0743 10 13503512 13505953 Vra10g0743 10 13503512 13505953 ECH