Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0739 ATGGTCGCAGAAACGGAAATCATCTGCCAGAAGAGCATTCCCATGCTGGACGTGAAGTACCACCTTTGCGTGGTGCAAGAACACGGTGTTAAGGTTGATGTTTCGCCCACCTCCAATGTTGTTCCCATTTTTGGTCACGTGAGGGTTGCCGCTGAATCTGTTTCTACGGAAACCACTAGTTTTGAATCGGCTGTGAGTTTGCATGAGATGATTGGAGATTCAACTTTAGAGGCTCCTGCTATTAAGTTTACACCAGATGTGCGATCTGGCTGTTGTGCTGATATTGGACCTAGGGGGTCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTGCGCACCTTGGATTCAACTTTGAGCATCCTATGGCAAGTGCGTTTTATGCAGTTTTTGATGGGCATGGAGGGCCAGATGCAGCTGTCTTTGTTAAAAACAACGCTATGAGATTATTTTTTGAAGATGCTCATATGCTGCAATCATACGATGCTGATGCACTTTTTCTGAAGAGGTTGGAAGATTCTCATCGAAAGGCGTTTTTGGGAGCAGACATTGCCTTGGCTGATGAACGAAGTGTTAGTAGTTCCTGTGGGACAACGGCGCTGACTGCTCTTGTACTCGGGAGGTATTTGATGGTTGCTAATGCTGGGGACTGTAGAGCTGTTCTTTGTAAGCGAGGCGTGGCTGTTGATATGTCCCAAGATCACAGACCGAGTTATTTACCAGAACGCAGGAGAGTGGAGGAGATGGGTGGATATATTGATGATGGGTATCTCAATGGTCATCTTTCTGTGACTCGTGCTCTTGGGGATTGGGACTTGAAAAATGCACTTGGTTCTGTGTCGCCTCTTATTGCCGACCCGGATGTTCAGGTGGTCACATTGACAGAGGAGGATGAGTTCTTGATCATTGGTTGTGATGGTATTTGGGATGTACTGTCAAGCCAGGATGCTGTTAGTCTGGTGCGGCGTGGATTAAGAAGGCATGACGATCCTGAACAATGTGCCAGAGAGCTAGTCAAGGAAGCTTTGCGCCTACACTCCTCAGATAATCTTACTGCAATTGTTATCTCCTTGTCCCCTGTCCAGATTGTTGAGTCTTGTCTACCCCAAAGGCGAAGATTCAGATTTTGCTCCCTGTCTGAAGAGGCCCGGACCAGGTTGAGGAGCTTGCTAGAGGGAAACTGA 1185 0.4717 MVAETEIICQKSIPMLDVKYHLCVVQEHGVKVDVSPTSNVVPIFGHVRVAAESVSTETTSFESAVSLHEMIGDSTLEAPAIKFTPDVRSGCCADIGPRGSMDDEHIQIDDLAAHLGFNFEHPMASAFYAVFDGHGGPDAAVFVKNNAMRLFFEDAHMLQSYDADALFLKRLEDSHRKAFLGADIALADERSVSSSCGTTALTALVLGRYLMVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERRRVEEMGGYIDDGYLNGHLSVTRALGDWDLKNALGSVSPLIADPDVQVVTLTEEDEFLIIGCDGIWDVLSSQDAVSLVRRGLRRHDDPEQCARELVKEALRLHSSDNLTAIVISLSPVQIVESCLPQRRRFRFCSLSEEARTRLRSLLEGN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0739 394 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 381 - -
Vra10g0739 394 SMART PP2C_4 78 356 IPR001932 -
Vra10g0739 394 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Vra10g0739 394 Gene3D - 76 362 IPR036457 -
Vra10g0739 394 SUPERFAMILY PP2C-like 83 360 IPR036457 -
Vra10g0739 394 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Vra10g0739 394 Pfam Protein phosphatase 2C 98 350 IPR001932 -
Vra10g0739 394 CDD PP2Cc 87 358 IPR001932 -
Vra10g0739 394 PANTHER PROTEIN PHOSPHATASE 2C 1 381 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0739 Vra-Chr10 13414178 13416447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0739 1 393 PP2C-type Phosphatase Gene Family AT1G48040 57.035 2.38e-144 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0739 K14803 - gmx:100798957 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0739 10 13414178 13416447 Vra10g0739 10 13414178 13416447 ECH
Vra7g2736 7 47644229 47646680 Vra10g0739 10 13414178 13416447 PCT