Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0733 ATGGCCACGGCGGAGACCGCTCCTGCGGGGCTTGGCCCTAGATATGCACCTGATGACCCTACTCTTCCACAACCATGGAAGGGATTGATTGATGGCAGCACAGGATTGTTATATTATTGGAATCCTGAAACTAATGTAACACAATATGAAAAACCTCCTCCTGTAACACCACCCTTGCCTGCGCCTGTGGCTTCTGCACCGAACTTGGCACCTATACCTGTGTCTCACACAATGCAGACGAGTGGGATGGGACCGCAGCATGGACAGCCCTTAATGCAAGGCCAACCTTCGCAACAGCAGCTGGGTCACCTTGCCCAACAGCAAGGACAATCGATGCCACTTCAGCAAAGTCCCCATATGGTGCAAATCACCCCGCAGAACCACTCTCAGGGTGCTCAGTCTGCTCCGCAGCAGAACTCACTGATGACACAGTCAGTACCGCAGCCAGTCTTACATCAAGCTAGACAGCAAATGTTGCAGCCCCAGGGGCAGCAAATGTTGCAGCAGTCTCAAGGACCGCAAATTCAAAATCAGATGCCGCCACAGGCAATCCATTCCCAGCATTTTGGACAAGGAATGCCTCAGGATCATGGCTCACATATTGTACCTCCACAAGTACATCAATTTCCTACCCAAAACATGCACTATATGTCATATCAGCAAAACATTATTACACCCAGACAACCAAACTCTCAACACATTCAGCTAAACACTGTCTCACCCGGGCAACCTAACCCCCAGCAGGTTCAGCATAACATGCATAGTCAACCCTTCGAAAATCAACAAACAACATTTCCAAAGGTAGAGGAAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACTTTCACCATCCCAGTATCCGCAGAGGAGTACCTTGCCTGCTCAGAATAATCAGAACCTTCCTCCTGACACAGCTTCTGGTCAAATGCCTAATGTAGGTGTCAATGCTGGTCAGCCACAGCAATTTAGGACTGCCTTATCAGGCAGTGTGCAGAAGTCGCCCTCTGCAATGCCATTGCAGCAGGGTGGATCTGATTTATATTACCAACATGGTCCTAACTTTCATAAGCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGCCAAAAGATGAGTCAGGAGGACAATTTACGTGGCAGAGCAGGAAATGAATATTACTATAATTCTAACAAAGATATGTCCACAATGGGTCGTCGGCAACCAGATATGACTCAAATACCCGTTCCAAGAAATCAGCAGGATACGAGGATTGGCAATACTCCTTTTCAAAACGTAATGCCAAGTGGGAATGGAAGTGGTATTGCTGGGAATGCTATGCCTAGCATGTTTGTTCCTCCAATGGGAGGACCTTCACCTCTCTCTAATAACGCTTTAATGAGGCCTTCTTATATGGGATCTTCTGATGCAAGTGATCTTTCACCGGCTGAAATTTACTGCCAGCAACATGAAGTTACGGCAACGGGTGGTGACATTCCCCCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAGGGTAGAGACATAGTAGCAATTGCCAAAACTGGCTCTGGGAAAACATTGGGTTACTTAATTCCTGCCTTCATTCTTCTTAGACAGCGACACAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGGGAACTAGCGACACAGATTCATAATGAGGTTATCAAGTTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAGGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTACTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCAGGAAGATTGTGGATGAGATTCCTGCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGTGAACTTCTTGTGAATCCTGTCCAGGTTAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCCATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAGCAGAGGCGTTTGGAACAGATCCTCAGATCCCAAGAACGAGGTTCTAAGGTCATAATATTTTGCTCCACGAAGAGGTTATGTGATCAACTAGCTCGTAATATTGGCCGCACTTTTGGGGCTGCTGCAATTCATGGAGATAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTAATAAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACACGCTGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGAACGGGGTGGGATGAGTAGGTTTGATTCTGGTGGTGGGCGTTGGGAGACTGGTGGTCGTGGTAGCATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGAATGAGGGATGGTGGCTTTGGTGGTCGTGGGGGTGGCATGAGGGATGGTGGTTTTGGGGGGCGTGGGGGTGGCATGAGGGATGGTGGCTTTGGTGGTCGAGGTGGAGGCATGAGGGATGGGGGATTTGGTGGACGTGGTGGTGGTTTTAGTGGACGTGGTGGCATGAGGGATGGAGCTGGTGGGAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTAGGGGATCTGGTGGTCTTCGTGGTGGTCATGGTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGTGGTCAGGGGCGTGGACGTGGCCGATTTGACAACAGAAGGGATGTTTCTTACAAAAGTAGAGGCAGAAGTTATAGTCGAAGCCCAGAAAGAGTCCGAACATGGGATTATAGTAGCAGTAGCAGAAGTCGTAGTCGAAGCAGGAGTTGGAGCAGGGATCGTAGTAGAAGCCGAAGTCGCAGCTGGTCTCGTGGCCGAAGCCGAAGCCGAAGCCGAAGCCGTACCCGCAGCAGGAGCCGGAGCCGGAGTTATGATAGGCGGGATAGGTCAGTTCAACAGCTTCCTGATCGAAAGGATCTTAGGCCACACGAAGTGGGAACTTCTGAAGCAAGAAATCTTCCCTTGTCTCCTGGTCCTGGCAAACAGGAGAATTCCTCTTTGGGAAGTGAGCAAGGGCAGCAGCAATCTGTTGTTGTTAGCTCTGATCCAGGGAATCCAGAAGCTGTAGCAGACCTTAGTCACGAATCAGCTTCTGGTGTTTAG 3534 0.4864 MATAETAPAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPPPVTPPLPAPVASAPNLAPIPVSHTMQTSGMGPQHGQPLMQGQPSQQQLGHLAQQQGQSMPLQQSPHMVQITPQNHSQGAQSAPQQNSLMTQSVPQPVLHQARQQMLQPQGQQMLQQSQGPQIQNQMPPQAIHSQHFGQGMPQDHGSHIVPPQVHQFPTQNMHYMSYQQNIITPRQPNSQHIQLNTVSPGQPNPQQVQHNMHSQPFENQQTTFPKVEEAEFKNGSQVGLSPSQYPQRSTLPAQNNQNLPPDTASGQMPNVGVNAGQPQQFRTALSGSVQKSPSAMPLQQGGSDLYYQHGPNFHKQMSPGMMHGHPSNVHPAGQKMSQEDNLRGRAGNEYYYNSNKDMSTMGRRQPDMTQIPVPRNQQDTRIGNTPFQNVMPSGNGSGIAGNAMPSMFVPPMGGPSPLSNNALMRPSYMGSSDASDLSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIASELLVNPVQVNIGSADELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRFDSGGGRWETGGRGSMRDGGFGGRGGMRDGGFGGRGGGMRDGGFGGRGGGMRDGGFGGRGGGMRDGGFGGRGGGFSGRGGMRDGAGGRGDFFPGRGNRGRGSGGLRGGHGGWGRGERGMDDRGQGRGRGRFDNRRDVSYKSRGRSYSRSPERVRTWDYSSSSRSRSRSRSWSRDRSRSRSRSWSRGRSRSRSRSRTRSRSRSRSYDRRDRSVQQLPDRKDLRPHEVGTSEARNLPLSPGPGKQENSSLGSEQGQQQSVVVSSDPGNPEAVADLSHESASGV* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0733 1177 MobiDBLite consensus disorder prediction 1009 1047 - -
Vra10g0733 1177 SUPERFAMILY WW domain 15 52 IPR036020 GO:0005515
Vra10g0733 1177 MobiDBLite consensus disorder prediction 1078 1097 - -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 77 116 - -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 276 316 - -
Vra10g0733 1177 Pfam WW domain 22 52 IPR001202 GO:0005515
Vra10g0733 1177 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 653 661 IPR000629 -
Vra10g0733 1177 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 502 530 IPR014014 GO:0003724
Vra10g0733 1177 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 264 973 - -
Vra10g0733 1177 Pfam Helicase conserved C-terminal domain 733 841 IPR001650 -
Vra10g0733 1177 Gene3D - 478 710 IPR027417 -
Vra10g0733 1177 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 736 880 IPR001650 -
Vra10g0733 1177 SMART ww_5 21 54 IPR001202 GO:0005515
Vra10g0733 1177 MobiDBLite consensus disorder prediction 153 193 - -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 1 26 - -
Vra10g0733 1177 CDD SF2_C_DEAD 721 850 - -
Vra10g0733 1177 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 707 IPR014001 -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 277 316 - -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 1135 1159 - -
Vra10g0733 1177 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Vra10g0733 1177 SMART helicmild6 757 841 IPR001650 -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 1063 1077 - -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 883 1177 - -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 1048 1062 - -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 1098 1123 - -
Vra10g0733 1177 CDD DEADc 513 707 - -
Vra10g0733 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 856 IPR027417 -
Vra10g0733 1177 SMART ultradead3 521 724 IPR014001 -
Vra10g0733 1177 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Vra10g0733 1177 Gene3D - 711 882 IPR027417 -
Vra10g0733 1177 MobiDBLite consensus disorder prediction 153 201 - -
Vra10g0733 1177 Pfam DEAD/DEAH box helicase 526 696 IPR011545 GO:0003676|GO:0005524
Vra10g0733 1177 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 264 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0733 Vra-Chr10 13354639 13362576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0733 500 879 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 1.40e-63 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0733 K12823 - gmx:100807830 1481.85