Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0725 ATGTGCAGCTGCATCTTTGGGCCAATAATCATGGACAATTACCAAGGTGATTTAACTGACATAGTCCGAGCCAGTGGTGGAGCATATGGTGGTGGTGGTGGTGGCAGTAGCAGCTGCAGTACAGGCACTTCATCTGCTGAATTACCTACCACATCTCATCACCATACTATTACTCACACCCTCTCTCGTAATGATCACTGGCACCAACACTTCTCTTCTTCTTCTTCTTCTTCTGATCCCATCACCTTCTCTTCTGTGCTTCAAGACCCCAGAGGACTCACCAACTTTGGTGATCCCTTCTCCACCATGAGAGATCCCTTCCTTCAGGAGCTTGACATGCCTTCCGCTTCTTCCTACTTCACTGGGGGCTTGGAAGAAGCAGCTGCGAGTTTTGGTGCTTCTGCTGTTAGTACTAGTACTAATACTAATGCTAGCACCACTGTTTTTGCTGCACACAAGATTCTCGAGGAGCATGACATGAGAAGACCTTGTAAAAACATATTCTCCAACATGATTCAGATCTCTCCCAATGCAAAGTTACCGGTCTCACCCTATGATTCCACCACAGCGGTGGCACCTTCTCCAAGGGCAATTAAACCTCCTGCTGTTGTTTCACCCAACATGGTTAATGCAAACTCCTCCAAGGATTGCCTTGTGGACACCACAGGAGTGCAGATCTCGTCTCCACGGAATCCGGGTCTTAAACGAAGGAAGAACCAGGCCAAAAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTTGTTCCGTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTACTACAGATGCAGCAGCTCAAAGGGTTGCTCTGCGAGGAAGCAAGTTGAGCGGAGCAGAACAGACCCAAACATGTTGGTTATTACATACACATCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTGGCTGGTTCGACCAGGTCACAGCCATCCAAGAACAATGCTGGAAATTCAAAGAGCTCAGAAGGGTCAAACCCCCAAAAGAGCACAACATCAAAAGCAAAGGACGAGCAGCAGCAGCAGCAGGAGAGCAACAATAGTGAGGGCAATGTGTCCCCAGTTGTTGCTGGGAACTCATCAGCGAACAGTGCATCTGTGAAGGAAGAGAATATGGAGGACATAGAGAAGCAGTTTGAGATGGATGAGGGAGAGTTCAGTGATGGACTACCTTACAAGCCTTGTTTGATGGATCAGAGTAATAATCAATCTGAGGACTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCGCTGGATATTCTGTTTACCCAAGGTTTTGGTGCGGCTGATGATCAAAGGGAAGAATCCAAGGCCTTGGATCCATTCCATCTGTTTGACTGGTCAGGAGACAACAACACCAGCACAAACAGCAGTTCATTTGAAGAGCCTAATGCAAAGAGAAGGTTATAA 1494 0.4732 MCSCIFGPIIMDNYQGDLTDIVRASGGAYGGGGGGSSSCSTGTSSAELPTTSHHHTITHTLSRNDHWHQHFSSSSSSSDPITFSSVLQDPRGLTNFGDPFSTMRDPFLQELDMPSASSYFTGGLEEAAASFGASAVSTSTNTNASTTVFAAHKILEEHDMRRPCKNIFSNMIQISPNAKLPVSPYDSTTAVAPSPRAIKPPAVVSPNMVNANSSKDCLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNAGNSKSSEGSNPQKSTTSKAKDEQQQQQESNNSEGNVSPVVAGNSSANSASVKEENMEDIEKQFEMDEGEFSDGLPYKPCLMDQSNNQSEDFFAELGEIEADPLDILFTQGFGAADDQREESKALDPFHLFDWSGDNNTSTNSSSFEEPNAKRRL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0725 497 Gene3D WRKY domain 237 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0725 497 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0725 497 MobiDBLite consensus disorder prediction 280 399 - -
Vra10g0725 497 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 15 478 - -
Vra10g0725 497 Pfam WRKY DNA -binding domain 265 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0725 497 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 478 IPR044810 GO:0003700
Vra10g0725 497 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra10g0725 497 SUPERFAMILY WRKY DNA-binding domain 261 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra10g0725 497 MobiDBLite consensus disorder prediction 475 490 - -
Vra10g0725 497 MobiDBLite consensus disorder prediction 474 497 - -
Vra10g0725 497 MobiDBLite consensus disorder prediction 307 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0725 Vra-Chr10 13281478 13285524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0725 1 458 WRKY Transcription Factor Family AT2G34830 42.675 7.50e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra10g0725 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0725 - - aprc:113852911 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0725 10 13281478 13285524 Vra10g0725 10 13281478 13285524 ECH