Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0718 ATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAAGCAGCACTCAAAGCTGGAGTTATCAAGCATGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAATAATGTTTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGCGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAGAAGTCTAGGCTAGCGGTCAGAAGGGTGCATCATACCCCAAAACAGGATGAGCACTCCATGTCCATCACTCCTGTTGCTCCTAGTGATGAAGACATTGTTGATGTTAAGCCTCTTCAAATTTCTAGAGATACAGTGCATATTCTGGGTCCGAAAAGATCTAATTTAAGTTTGGATAAACTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCTGCTTTCATAGAGGACCACTATTGGGCGCTGCCAGACTTAAAAAGGATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGTAAACCGCAAGTATAGGATTGCACCTACAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGTTATTTTTGGATGGGAGGCAAAAAGCCTCCATGAAAATGGACAAGGATGAGACCAACATTCTTACTAAATCTCAGATAGATTTAGAGTTAGCGAAGATAAGGTCCATGACTCCGCAAGAGGCAGCTGCATTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCTGAAGCAGAGGAGGCAGCCAAGGAGGCTGAAGCAGCAGAAGCCGATGCAGAGGCGGCTCAAGCTTTTGCAGATGCTACAACAAAATCAGGGAAAGGAAGGAAATCCCCAAGGAGGATCCATGCTTGA 900 0.4456 MGAPKQKWTAEEEAALKAGVIKHGVGKWRTILKDPEFNNVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHHTPKQDEHSMSITPVAPSDEDIVDVKPLQISRDTVHILGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDHYWALPDLKRMLSAKLKFLTASGKLIKVNRKYRIAPTAAYSDRRRNSSMLFLDGRQKASMKMDKDETNILTKSQIDLELAKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSGKGRKSPRRIHA* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0718 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Vra10g0718 299 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra10g0718 299 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vra10g0718 299 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 295 - -
Vra10g0718 299 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vra10g0718 299 Gene3D - 2 59 - -
Vra10g0718 299 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Vra10g0718 299 Pfam linker histone H1 and H5 family 123 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra10g0718 299 Gene3D - 117 197 IPR036388 -
Vra10g0718 299 Coils Coil 243 280 - -
Vra10g0718 299 SUPERFAMILY "Winged helix" DNA-binding domain 118 197 IPR036390 -
Vra10g0718 299 MobiDBLite consensus disorder prediction 262 299 - -
Vra10g0718 299 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Vra10g0718 299 SMART sant 4 59 IPR001005 -
Vra10g0718 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra10g0718 299 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0718 Vra-Chr10 13216365 13221509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0718 1 237 Single Myb Histone (SMH) Gene Family AT1G49950 61.157 3.06e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra10g0718 Linker_histone 6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0718 K09422 - gmx:100780698 463.766