Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0703 ATGTTCATAACATTGCCTCCTATATATGCTCTGGCAGATTATGCAGGGCCATATTTTGGACTTCCATATTCCAAAGAAGGGCATATTATAGCAAAGCCTGGGTGTATTTTCAGATGTGGAGGTGCTGACATCTCGTACCCTTTTGGAATGAAAGATCCGAAATGCTACGGAGGCAAGTGGTTTGAAGTAGAATGCAGAGAAACTTCCGACGGCCAAAAACCCTTCGTAAAGTCTTTAAATCTGGAGTTGATAGTAGTTGGCTTGAATTGGGTTTATATCAAGAATCCGATTTTCCATTGGAACTGCCCGGGCAGAAGAGGGACGCCAGAAGTAATAAACCTGAGGGGAAGCCCTTTTGTGTATTCCCAGGAATTAAACAAGTTTGTGGCCGTTGGTTGCAACAACCTTGCCTTTTTGCAGTCCAATGGGTCCACTGTTGCTTGCTGTGCGTCCATGTGTGATGGCAATGAAGAAGTCAAGCATAACTTCAACTTGGTAAGAGAAGATGGTTGCAGTGGCAGGTACTGCTGTGAGACTTCACTGCCCAAGTATCTTTCAGAATATAACGCATCATTTCAACATTTTAACACCGAAAACAATAATACTGTGAGTGAACCATGTACTTATGCGTTCATTGCATATCAACACTGGTATGCGTTTGACCTTAACAATACGGATTATACTAATGTAATTCTTGAGTGGGATATATTGGACAGCACGCTTGACAATTCTACCCATCAACACCTTTCAGAATCAGAGTATGTCACTTGTAATCGCTCTAATGTTGGATCTTTGCAAAACACAAGCTCTAGTTGGAGATGTCACTGCTCAGAAGGCTTCCATGGCAATCCCTACGTTCCAGGAGGCTGCACTGCCATCCCAGGTTATTATAATCACAGTCAAGCGAAGAAGTGGGCTATAGTAGGAGTTTCGTCAAGTCTGGGATCTATCATTTTTCTCCTTGGTCTATGGTTGTTGTATAAGGTTGCAAGGAAGAGAGTGATAGAGAAACGTAAACAGAAGTTCTTCAAAAAGAATGGTGGTTTGTTGTTGCAACAAAGAATGTCATCTAATGAAGCTAATGTAAACAAAGGTATTCTCTTTAGCTTAGATGATTTAGAAAAAGCCACTGACAACTTTAACATGGATAGAGTTCTGGGAAAGGGTGGGCAAGGTACGGTTTACAAAGGAATGCTTGTAGATGGTAGAATTGTTGCAGTGAAAAAATTTAAGGTGGAAGGAAATATTGAAGAGTTCATCAATGAGTTTGTCATTCTCTCACAAATCAACAACAGAAATGTGGTCAAATTGTTAGGATGTTGTTTGGAGACAGAAATTCCCCTACTTGTTTATGAATTCATTCCTAATGGTAATCTCTTTGAATATTTGCATGACCAGACAAAGGAGTTATTACCAATGACATGGGAGATGTGTTTGAGAATTGCCACTGAGATCGCAGGAGCTCTCTTTTACCTGCACTCGGTTGCATCTAAACCCATTTATCATAGAGATATCAAATCCACAAATATACTATTGGATGATAAGTATAGGGCAAAAATTGCAGATTTTGGAACATCCCGGGTAATTTCTATTGAAGCTACTCATCTTACAACTGTTGTTCAAGGTACCTTCGGTTATTTGGATCCTGAATATTTTCACACTAGTCAATTTACAGAGAAAAGTGATGTATATAGTTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGCCAAAAGCCAATATCACCAGCAAGATCTGGAGAGTGCAAGAGTCTAGCATCATATTTTGTTGAGTGTCTGGAGGAGGACAATCTGTTTGACATTATTGACAAAAGAGTTGCGAAAGAAGCTGAGAAGGGACAAATCATTGCCGTTGCTAATCTTGCAAATAGATGCTTAGAGTTGAATGGAAAGAAACGTCCAACTATGAAAGAGATCACACTTGAATTAGAAGGGATTCATGGATTGGTTAGGAAGTGTAATGCAGAGAAAAAAGGTGACGAAGTTGAGCTTGCAGAAGTTGGCATCCTAGGGATGGATATTCTACGTCAAAGTCATGGTACTCAAAAGGTTGTACCTATGGTACAATAA 2088 0.3989 MFITLPPIYALADYAGPYFGLPYSKEGHIIAKPGCIFRCGGADISYPFGMKDPKCYGGKWFEVECRETSDGQKPFVKSLNLELIVVGLNWVYIKNPIFHWNCPGRRGTPEVINLRGSPFVYSQELNKFVAVGCNNLAFLQSNGSTVACCASMCDGNEEVKHNFNLVREDGCSGRYCCETSLPKYLSEYNASFQHFNTENNNTVSEPCTYAFIAYQHWYAFDLNNTDYTNVILEWDILDSTLDNSTHQHLSESEYVTCNRSNVGSLQNTSSSWRCHCSEGFHGNPYVPGGCTAIPGYYNHSQAKKWAIVGVSSSLGSIIFLLGLWLLYKVARKRVIEKRKQKFFKKNGGLLLQQRMSSNEANVNKGILFSLDDLEKATDNFNMDRVLGKGGQGTVYKGMLVDGRIVAVKKFKVEGNIEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQTKELLPMTWEMCLRIATEIAGALFYLHSVASKPIYHRDIKSTNILLDDKYRAKIADFGTSRVISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKPISPARSGECKSLASYFVECLEEDNLFDIIDKRVAKEAEKGQIIAVANLANRCLELNGKKRPTMKEITLELEGIHGLVRKCNAEKKGDEVELAEVGILGMDILRQSHGTQKVVPMVQ* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0703 695 ProSiteProfiles Protein kinase domain profile. 380 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0703 695 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 24 667 - -
Vra10g0703 695 SMART serkin_6 380 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0703 695 Gene3D Transferase(Phosphotransferase) domain 1 454 672 - -
Vra10g0703 695 Pfam Wall-associated receptor kinase galacturonan-binding 37 78 IPR025287 GO:0030247
Vra10g0703 695 Pfam Protein tyrosine and serine/threonine kinase 381 648 IPR001245 GO:0004672|GO:0006468
Vra10g0703 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Vra10g0703 695 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 667 IPR045274 GO:0007166
Vra10g0703 695 Gene3D Phosphorylase Kinase; domain 1 345 453 - -
Vra10g0703 695 SUPERFAMILY Protein kinase-like (PK-like) 360 649 IPR011009 -
Vra10g0703 695 CDD STKc_IRAK 386 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0703 Vra-Chr10 13125864 13129081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0703 35 653 Receptor kinase-like Gene Family AT1G69730 44.223 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vra10g0703 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0703 - - gmx:100798794 925.235