Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0692 ATGGATTTTGCCATGGGAGCTGCAGGTGGATCTGGAGATGATGATAAACACAAGCACAGTCACAATAAGAGCTCAAACAAAGGGAAAAAGGCCTACCATGGTCACAACTCTGATAGAACATCTAAGCTTGAAGAAATGTTCCGGAAGTGTCCACATCCGACAAAAAGCATAAGATTGCAAATGGCAGAAGAACTGGGACTTGAGCCAAAACAAGTAAAATTTTGGTTTCAGAATAAGAGAACTCAAATAAAGACTCAAACTGAGCGAATAAATAACAATATCTTCCGTATTGAGAATGAAAGGATACGTAAAGATAACCTCTTGTTGAGAGAGGCATTCAAAAATATAACTTGTGCAACTTGTGGAGGTCCATCAAACGATGAAAATCGTAAACATTCTCTAGAACAACTTCGTCTTGAAAATGCACGTCTTAGAGAAGAGCTTGAGAGGCTGCCTAATGCTCTTGCAAAGTACATGGATAAATCAGTATTAGACCTAAACATGATGAACTACACTCTTATGAGGGGATCTTCATCGCGTGCTCCGTTAATACCTGGAAGTTATCTGAGACTAAATGGTTCATGTGAAGATACCATGCTCAATCGTGGGAGAAGAATAACACAAATGGAGAAAACAATGATGTCACAAATTGCAGTGACTGCTAAGGAAGAATTAATCAAGCTTCTGTGTACCAATGAACCCATATGGGTCAAATCTTCAGATCATCAAAGATTTGTTCTTCATCTAGAAAGCTACCAAACATTCTTTCCAAGGATTAATCACTTCAAGAATTCCCAAGCTCGTGTAGAATCATCAAAAGATTCACTGGTTGTGAGAATTCAGGCAATGAAATTAGTTGACATGTTTCTGAATTCGGAACACTGGACAGATCTTTTCTCAACAATTGTTACAAAAGCTCGCACAATCAAAGTAATTGAAAATGGTTCAAACAGAAGTGGAGTTTTGTTGTTGATGAGTGAAGAGATGCATGTTCTTTCACCTTTAGTTCCATCTCGGGAATTGTTCTTCCTTCGTTATTGTGAACAAATTGAAGCACATTCATGGGTGATAGTAGATGTTTCTGTTGACTGCACCACCGGGAACAACAATCCTACATATTGGAAGTTTCCCTCTGGATGCATAATTCATGAAATTTCAAATGAGTTGTGCTGGATTTCTTGGGTTGAACATGTGGAAGTGGATGAGAAGATTGAAACGCATCAACTATACAAAGATATAGTCAATAACAGCATTGCATATGGAGCAGAAAGATGGCTTTTGGAACTTCAAAGAATGTGTGCAAGATTTACAAGTTTTGGAGATGAAATACCTGATTATGACATCAATGGAGTGATAACTGCTATGGGAGGAAGGAAAAATATGATAAAGTTTTCTCATGGAATGCTGAAAAACTTCTATGGAATTTTAAATATTTCAAGTAAGACAGAGTGCCTTGAACATTTAGCTGAGGAGAATACTGATATTATGGTTCTTGCTGGGAAATACACAAATCCAAGCCAATCAAATGCCATGATTATATTCATTGCTACTGCTTCTTTTCGGCTACCTCTCCCCTCGGAATATGTTTTTGACTTCTTTAGAGATCCAACAAAACGTGCTAAGTGGGATGTTATGTGTTGTGAGAGTCCAGTGCACGAAGTTGCACGAGTCTCTGTTGGAACTAACCCTAGCAACTGCATATCGATTATACAGCCTCTTCACCGAACTGCTAATAACACGGCCATTATTCAGGAAAGTTATATTGATGCTTTGGGATCATATGTTGTGTATTCTCCTGTGAATATATCTGACGTAAAGATGGCTGTAAATGGTGAAGATCCAGCAAGAATGTCAATCTTTCCATCAGGCATTGTCATATCAAAAGATGTTCAATCTATCACACATGCTTCTGCATGGAGTAGTGGAAGTGGTGATAAGAGAACACACGGTACTCTAATGACTATGGCTTTTCAAATACTGATGAATGGTCCAACAACTATGGTAGCAGAATCCAAGACTGTTATTAAGTCTCTCATGACCTCAACAATACAAAATATAAACCATGCTTTGATAAATGGTTCTAATCTAGAGTTTTAG 2097 0.3796 MDFAMGAAGGSGDDDKHKHSHNKSSNKGKKAYHGHNSDRTSKLEEMFRKCPHPTKSIRLQMAEELGLEPKQVKFWFQNKRTQIKTQTERINNNIFRIENERIRKDNLLLREAFKNITCATCGGPSNDENRKHSLEQLRLENARLREELERLPNALAKYMDKSVLDLNMMNYTLMRGSSSRAPLIPGSYLRLNGSCEDTMLNRGRRITQMEKTMMSQIAVTAKEELIKLLCTNEPIWVKSSDHQRFVLHLESYQTFFPRINHFKNSQARVESSKDSLVVRIQAMKLVDMFLNSEHWTDLFSTIVTKARTIKVIENGSNRSGVLLLMSEEMHVLSPLVPSRELFFLRYCEQIEAHSWVIVDVSVDCTTGNNNPTYWKFPSGCIIHEISNELCWISWVEHVEVDEKIETHQLYKDIVNNSIAYGAERWLLELQRMCARFTSFGDEIPDYDINGVITAMGGRKNMIKFSHGMLKNFYGILNISSKTECLEHLAEENTDIMVLAGKYTNPSQSNAMIIFIATASFRLPLPSEYVFDFFRDPTKRAKWDVMCCESPVHEVARVSVGTNPSNCISIIQPLHRTANNTAIIQESYIDALGSYVVYSPVNISDVKMAVNGEDPARMSIFPSGIVISKDVQSITHASAWSSGSGDKRTHGTLMTMAFQILMNGPTTMVAESKTVIKSLMTSTIQNINHALINGSNLEF* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0692 698 Pfam Homeodomain 33 84 IPR001356 GO:0003677
Vra10g0692 698 ProSiteProfiles START domain profile. 207 438 IPR002913 GO:0008289
Vra10g0692 698 SUPERFAMILY Bet v1-like 208 436 - -
Vra10g0692 698 Gene3D - 14 97 - -
Vra10g0692 698 CDD homeodomain 29 86 IPR001356 GO:0003677
Vra10g0692 698 ProSiteProfiles 'Homeobox' domain profile. 26 86 IPR001356 GO:0003677
Vra10g0692 698 Coils Coil 134 161 - -
Vra10g0692 698 SUPERFAMILY Bet v1-like 458 688 - -
Vra10g0692 698 Gene3D - 216 435 IPR023393 -
Vra10g0692 698 Pfam START domain 217 435 IPR002913 GO:0008289
Vra10g0692 698 SMART HOX_1 27 90 IPR001356 GO:0003677
Vra10g0692 698 MobiDBLite consensus disorder prediction 1 41 - -
Vra10g0692 698 SMART START_1 216 435 IPR002913 GO:0008289
Vra10g0692 698 CDD START_ArGLABRA2_like 211 434 - -
Vra10g0692 698 ProSitePatterns 'Homeobox' domain signature. 61 84 IPR017970 GO:0000981|GO:0006355
Vra10g0692 698 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 691 IPR042160 -
Vra10g0692 698 SUPERFAMILY Homeodomain-like 21 91 IPR009057 -
Vra10g0692 698 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 22 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0692 Vra-Chr10 12999516 13004451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0692 25 690 Homeobox Transcription Factor Family AT1G73360 38.817 7.71e-164 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra10g0692 START 1.4e-34 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0692 K09338 - gmx:100794552 822.772