Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0682 ATGAAGCCATTTAACTTTTTAGTGTTATCTTTGTATTTCTTCTCCGTGGTGGGGCAGCTTCCTTCTCAGGACATTTTAGCATTGCTGGAGTTCAAGAAAGGCATCAAACACGACCCCACTGGCTATGTGCTCAGTTCCTGGAATGAGGAATCCATTGATTTTGATGGATGCCCATCTTCATGGAATGGTGTTTTGTGCAATGGTGGTAATGTTGCCGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACACAGACTTGAGTGTGTTTTCAAATCTCACTAAGCTTGTGAAACTCTCCATGTCCAACAATTCCATAACAGGAAATCTACATGGCAGCATTGCTGAGTTCAAAAGCCTTGAATTCCTGGATATTTCCAATAACCTCTTTTCCTCATCTCTGCCATTAGAAATTGGTATGTTAAGCAGTCTGCAGAATCTGTCTTTGGCTGGCAATAATTTCTCTGGTCCAATTCCCGACTCAGTGTCAGAAATGGCTTCCATCAAGTCCATGGATTTGAGCCGCAACTCCTTCTCCAGAGAGCTGCCAGTGTCGTTGACTAAGGTGACTAGCCTTGTGTCTCTTAACTTGTCTCATAACAGCTTCACTGGAAAAATTCCCAAAGGTTTCGAGCTGATCCCTGCTCTTGAAAAACTTGACTTGCATGGTAATATGCTTGAAGGTAATTTGGATGTTGAATTTATGCTTTTATCGAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCTAGTTCTGATTCCAAGCAGAAGTTTCTACCGCGACTATCTGAAAGTATTAAGCATCTGAATTTAAGCCACAACAAGCTTACTGGATCATTGGCCAGTGGAGTTGCAGAACCGGTTTTTGAAAACTTGAAAGTGTTAGACCTCAGTTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTCCAGGTCCTCAGGCTTAGCAACAACAGGTTTTCAGGATTTATTCCTAATGGCCTACTGAAAGGAGACTCTTTGGTTTTAACCGAACTGGATTTGAGTGGCAATAATCTCTCTGGGCCACTAAGCATAATTACATCAACAACACTTCACTCTCTTAACCTCTCATCAAATCAGTTCACTGGCGAACTGCCACTGCTGACTGGAAGCTGTGTTGTACTTGATCTCTCAAACAACAAATTAGAGGGAAATTTAACCAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGCAATCATTTGATGGGGACCATACCTGAGGAAACTCCTCAATTTTTGCGTCTAAATTATTTGAATTTATCCCATAATTCTCTTAGCAGCTCCCTTCCAAAAGTCTTGACACAGTATCCAAAGCTGATAGTGCTTGACATTAGTTTCAACCAATTAGATGGACGGTTTCTATCCGGTCTGCTCACAATGCCCTCTTTGCAAGAGCTACATCTTGAAAATAATGTGATCTCTGGTTCCATCAATTTCTCATCTTCTCCTGACCAATCCGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTAATGGCTATTTTCCTGATGAGTTTGGGTCATTAGCTGGCCTTAAAGTGCTAAATATTGCTGGAAATAATTTTTCTGGCTCTCTTCCAACCACCATTGCTGACATGAATTCACTTGACTCAATGGATATATCAGATAATCATTTTACTGGTCCTCTACCAAATAACATGCCAAAGGGTCTCCAAAACTTCAATGCTTCTGGAAATGATCTATCTGGACTCGTCCCAGAAGTTTTTAGGAAGTTTCCCAGTTCTTCTTTCTTTCCTGGTAATTCCAAGTTACATTTTCCAAATGGTCCTCCAGGATCTACTGCACCTGCTGAAGGTTCCAAGAAGAAGCATTTGAACACCATTGTTAAAGTAATAATCATAGTGTCATGTGTGGTTGCGTTCTTCATATTAATCCTGCTTGCAGTCTTCATACACTATATACGGATATCAAGATCTCCACCAGAATATGATACAAGTAAGGATATCCACAGGCATCCTCAACCAATTATCTCGGCTCCTGTTCGAACTACTGACAGGGGTGGTGCTTTGGTTGTTTCAGCTGAGGACCTTGTGGCCACACGCAAAGAGTCGCCATCAGAGGTAATCAGCTCTGATGAAAAAATGGCAGCTGTAACGGGGTTCTCTCCATCAAAACAAAGCCATTTTTCATGGTCACCAGAATCTGGTGATTCATTCACCGGTGAAAATCTTGCAAGACTAGATACGAGGTCACCAGATCGGTTGATTGGAGAGCTGCATTTTCTTGATGATTCGATAACATTGACACCTGAGGAGCTCTCGAGGGCCCCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCCACCCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTAGCAAAACAGAGAAAAGAATTTGTCAAGGAAACCAAAAAATTTGCCAACATCAGACATCCAAATGTTGTGGGATTGAGAGGATATTATTGGGGCCCTACTCAGCACGAGAAGCTCATCCTTTCAGATTACATCTCACCAGGAAGTCTTGCAAGCTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCTTTAACTTGGATGCAGAGACTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCGTCCCTCATGGGAACCTCAAAGCCACAAATGTGTTGTTAGACACAACTGATATGAATGCACGTGTGGCCGATTACTGTCTTCACCGGCTCATGACTCAAGCGGGTACTATTGAACAGATTCTTGATGCTGGGGTCTTGGGTTATCGTGCACCCGAGTTAGCTGCCTCCAAGAAGCCAATGCCCTCCTTCAAATCAGATGTTTATGCTTTTGGAGTGATACTTTTGGAACTTCTAACCGGAAGGTGTGCTGGTGATGTGATATCTAGTGAGGAGGGAGGTGTTGATCTGACAGATTGGGTGAGGTTGCGTGTGGCAGAAGGCAGAGGCTCAGAATGTTTTGATGCTACCTTGATGCCTGAAATGAGCAATCCTGTTGTAGAGAAGGGAATGAAGGAGGTCCTTGGAATAGCCATGCGATGCATTCGATCAGTTTCTGAAAGGCCTGGCATCAAAACTATATATGAAGATCTCTCTTCTATATAG 3186 0.4262 MKPFNFLVLSLYFFSVVGQLPSQDILALLEFKKGIKHDPTGYVLSSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLTKLVKLSMSNNSITGNLHGSIAEFKSLEFLDISNNLFSSSLPLEIGMLSSLQNLSLAGNNFSGPIPDSVSEMASIKSMDLSRNSFSRELPVSLTKVTSLVSLNLSHNSFTGKIPKGFELIPALEKLDLHGNMLEGNLDVEFMLLSSASYVDLSENMLSSSDSKQKFLPRLSESIKHLNLSHNKLTGSLASGVAEPVFENLKVLDLSYNQLDGELPGFDFVYDLQVLRLSNNRFSGFIPNGLLKGDSLVLTELDLSGNNLSGPLSIITSTTLHSLNLSSNQFTGELPLLTGSCVVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLMGTIPEETPQFLRLNYLNLSHNSLSSSLPKVLTQYPKLIVLDISFNQLDGRFLSGLLTMPSLQELHLENNVISGSINFSSSPDQSDLQILDLSHNQLNGYFPDEFGSLAGLKVLNIAGNNFSGSLPTTIADMNSLDSMDISDNHFTGPLPNNMPKGLQNFNASGNDLSGLVPEVFRKFPSSSFFPGNSKLHFPNGPPGSTAPAEGSKKKHLNTIVKVIIIVSCVVAFFILILLAVFIHYIRISRSPPEYDTSKDIHRHPQPIISAPVRTTDRGGALVVSAEDLVATRKESPSEVISSDEKMAAVTGFSPSKQSHFSWSPESGDSFTGENLARLDTRSPDRLIGELHFLDDSITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWMQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLRVAEGRGSECFDATLMPEMSNPVVEKGMKEVLGIAMRCIRSVSERPGIKTIYEDLSSI* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0682 1061 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Vra10g0682 1061 Gene3D Transferase(Phosphotransferase) domain 1 858 1061 - -
Vra10g0682 1061 ProSiteProfiles Protein kinase domain profile. 779 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0682 1061 Pfam Protein tyrosine and serine/threonine kinase 783 981 IPR001245 GO:0004672|GO:0006468
Vra10g0682 1061 SUPERFAMILY L domain-like 46 379 - -
Vra10g0682 1061 Coils Coil 1058 1061 - -
Vra10g0682 1061 SUPERFAMILY Protein kinase-like (PK-like) 782 1058 IPR011009 -
Vra10g0682 1061 Pfam Leucine Rich repeat 292 306 IPR001611 GO:0005515
Vra10g0682 1061 Pfam Leucine Rich repeat 361 377 IPR001611 GO:0005515
Vra10g0682 1061 Pfam Leucine Rich repeat 342 354 IPR001611 GO:0005515
Vra10g0682 1061 PANTHER - 6 1061 - -
Vra10g0682 1061 SUPERFAMILY RNI-like 291 596 - -
Vra10g0682 1061 PANTHER OS07G0626500 PROTEIN 6 1061 - -
Vra10g0682 1061 Gene3D Ribonuclease Inhibitor 184 256 IPR032675 -
Vra10g0682 1061 SMART LRR_typ_2 526 549 IPR003591 -
Vra10g0682 1061 SMART LRR_typ_2 429 452 IPR003591 -
Vra10g0682 1061 SMART LRR_typ_2 93 116 IPR003591 -
Vra10g0682 1061 SMART LRR_typ_2 313 337 IPR003591 -
Vra10g0682 1061 SMART LRR_typ_2 141 165 IPR003591 -
Vra10g0682 1061 SMART LRR_typ_2 189 212 IPR003591 -
Vra10g0682 1061 SMART LRR_typ_2 290 312 IPR003591 -
Vra10g0682 1061 SMART LRR_typ_2 477 500 IPR003591 -
Vra10g0682 1061 SMART LRR_typ_2 503 525 IPR003591 -
Vra10g0682 1061 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Vra10g0682 1061 Gene3D Ribonuclease Inhibitor 257 618 IPR032675 -
Vra10g0682 1061 Gene3D Phosphorylase Kinase; domain 1 772 856 - -
Vra10g0682 1061 Pfam Leucine Rich Repeat 191 211 IPR001611 GO:0005515
Vra10g0682 1061 Gene3D Ribonuclease Inhibitor 23 183 IPR032675 -
Vra10g0682 1061 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0682 Vra-Chr10 12898401 12903919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0682 9 1009 Receptor kinase-like Gene Family AT4G36180 27.797 7.97e-80 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra10g0682 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0682 - - gmx:100793639 1920.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0682 10 12898401 12903919 Vra10g0682 10 12898401 12903919 ECH