Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0680 ATGGTGAGTGTCCTTGGGGAGGGACTCTATTTTGTTCTGATTCTTGTGGTAGTGTCTGTGACAGTGGGCACTGTGGATGCTCAAACGAAGTCTATCCTCTTAAATTGTGGTTCAAACTCTTCTTTGAATGTGGATGGTAGAAGATGGGTGGGGGACTTGGCCACCGATAACAATGTCACCCTAAGCACTCCCAGTGTTGTTGCTAACACTTCTACATTAAGTGGCAGTTCAATCTATGATCCTCTCTATAAAACAGCCAGAATTTTCACTGTTCCTTTGAATTACACAATCAAAAATGTTAAAGGAAACTACTTTGTTAGGTTCCATTTTTGCCCCTTTGCGATTGACGACTTCAATGTGAACGAGTCCTCATTCGGTGTTGTGGTCAATGGTCTGAAACTGTTATCAGAGTTTGATGTCCCTGGTAAGATATCCCACAAGAATATGAACTTGCTGAATTCTGGAAGAAATGCTAGTTCATTCTTCTTGGTAAAAGAATATATTCTGACTGTGAATGGGGATATGCTTGTGATTGAGTTCGTTCCAGCCAGAAGCTCCTTTGGCTTCATCAATGCCATTGAGATTGTCCCAGTTGTGGGTGAGCTTTTTTCTGGATCAGTTAGTAGAGTTGGTGGTGGAAACATAAATTTGTCCGGACATGGGATGGAGACCATGTATAGGCTGAATGTCGGTGGTCCTGAGGTTCAGTCCAATCAGGATCGTGATCTTTGGAGAACATGGGAAGTGGATTCTGGTTATATGATCATAGAAAATGCTGGGTCTGGAATTAAGAACAGTTCTAACATTACATATTCTTCCGTGAACGATACTTTGGTGGCTCCTCTCCTGGTGTATGAAACTGCGAGGACAATGTCCAACTCTGAAGTCTTGGACAAAAGGTTCAACATGTCATGGAAATTTGAAGTAGATCCCGACTTTGATTATTTGATCCGTATGCATTTCTGTGAGCTGGTTTATGACAGGGCAAATGAGAGAATATTTAGAATCTACATAAACAATAGGACAGCTGCGGATAATGTTGATGTGTTTGTGCGTGCTGGAGGGAGGAACAGAGCATATCACTTGGACTATTTTGATCCTGTGTCATCAAAGATTGACACGGTTTGGGTTCAACTCGGTCCTGACACAGCTGCTGGTGCTGCAGGAACTGATGCTCTCTTGAATGGTCTGGAGGTTTTCAAGCTCAGTCGAAATGGAAATCTTGCACGTGTTGAGCGGTTTGACATAGGTGGCAATCCAGGGAGCAAATCAAAAGCAATGGCTGTCTGGGTGGGAGTTGGAGCAGGTGTAGCTTCTTTAGCTGTAGTTGCACTTATAGTTCTTGTATTCTGTTTATGTAAAAGCAGGAGGAAGGAATCAAGTGATACCAAAAACAACCCTCAGGGTTGGAGACCATTGTTCCTCTATGGAGGGGCTGCTGTTAACAACTCTGTGGGTGGCAAGGGATCAGCAGGAACCCAAAAGCTATACGGATCAGTGGCCTCAGTTAGAGTTGGCAAGAGGTTTACATTGGCAGAAATCAATGCTGCAACAAACCACTTTGATGACAGTTTGGTAATTGGAGTTGGAGGCTTTGGAAAGGTGTATAAGGGGGAGATTGAAGATGGTGTTCTGGCTGCAATTAAGCGAGCCAACCCCCAGTCTGAGCAAGGCCTGGCTGAATTTGAGACAGAAATTGAGATGCTGTCAAAACTCAGACACAGGCATCTGGTGTCCTTAATTGGTTTCTGTGAAGAGAAGAATGAAATGATCTTGGTTTATGAGTACATGGCCAATGGAACTCTCAGAAGCCACCTATTTGGGAGTGATCTCCCTCCCTTACCTTGGAAGCAGCGCCTAGAAGTGTGCATTGGTGCTGCAAGGGGATTGCACTACCTTCACACAGGTGCTGACCGTGGAATCATTCACAGGGATGTCAAGACAACCAATATTCTTCTAGATGAGAACTTTGTAGCCAAAATGTCTGATTTTGGATTGTCAAAAGATGGTCCAGCCTTTGAACACACCCATGTTAGCACAGCTGTAAAAGGAAGTTTTGGCTATTTAGACCCTGAGTACTTCAGAAGGCAGCAATTGACTGAGAAATCAGATGTATACTCCTTTGGAGTTGTGTTGTTTGAAGTTGTTTGTGCTAGAGCTGTGATAAACCCCACCTTGCCTAAGGATCAGATCAATCTTGCAGAATGGGCAATGAGATGGCAGAGGCAAAGATCACTTGACACAATCATTGACCCTCATCTCAGAGGAAACTATTGTCCTGAATCATTGTCCAAGTTTGGAGAGATTGCAGAAAAATGTCTTGCTGATGATGGAAAGAGCCGTCCCACCATGGGGGAGGTGTTGTGGCATTTGGAGTATGTTTTACAACTACATGAAGCATGGCTCAACAGGGACACCACAGAAACTTCCTTCTCTAGTAGTAATCATGCTTTGAGAGGTCCAAAAGATGAAGGACTAGAAATGGTACAAGACTCTTCAAGCCAAGATGAAGTTGGTTTTGATCACCAACACACTGCTGAATCTGATTCAGTCCACACAACAAGAGAATGA 2571 0.4368 MVSVLGEGLYFVLILVVVSVTVGTVDAQTKSILLNCGSNSSLNVDGRRWVGDLATDNNVTLSTPSVVANTSTLSGSSIYDPLYKTARIFTVPLNYTIKNVKGNYFVRFHFCPFAIDDFNVNESSFGVVVNGLKLLSEFDVPGKISHKNMNLLNSGRNASSFFLVKEYILTVNGDMLVIEFVPARSSFGFINAIEIVPVVGELFSGSVSRVGGGNINLSGHGMETMYRLNVGGPEVQSNQDRDLWRTWEVDSGYMIIENAGSGIKNSSNITYSSVNDTLVAPLLVYETARTMSNSEVLDKRFNMSWKFEVDPDFDYLIRMHFCELVYDRANERIFRIYINNRTAADNVDVFVRAGGRNRAYHLDYFDPVSSKIDTVWVQLGPDTAAGAAGTDALLNGLEVFKLSRNGNLARVERFDIGGNPGSKSKAMAVWVGVGAGVASLAVVALIVLVFCLCKSRRKESSDTKNNPQGWRPLFLYGGAAVNNSVGGKGSAGTQKLYGSVASVRVGKRFTLAEINAATNHFDDSLVIGVGGFGKVYKGEIEDGVLAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKNEMILVYEYMANGTLRSHLFGSDLPPLPWKQRLEVCIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMSDFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVVCARAVINPTLPKDQINLAEWAMRWQRQRSLDTIIDPHLRGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNRDTTETSFSSSNHALRGPKDEGLEMVQDSSSQDEVGFDHQHTAESDSVHTTRE* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0680 856 Gene3D Phosphorylase Kinase; domain 1 490 596 - -
Vra10g0680 856 PANTHER OS07G0166700 PROTEIN 21 836 IPR045272 GO:0004714|GO:0006468
Vra10g0680 856 CDD STKc_IRAK 527 792 - -
Vra10g0680 856 SMART serkin_6 521 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0680 856 Gene3D Transferase(Phosphotransferase) domain 1 597 816 - -
Vra10g0680 856 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Vra10g0680 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vra10g0680 856 Pfam Protein tyrosine and serine/threonine kinase 526 788 IPR001245 GO:0004672|GO:0006468
Vra10g0680 856 PANTHER OSJNBA0058K23.13 PROTEIN 21 836 - -
Vra10g0680 856 Pfam Malectin-like domain 34 401 IPR024788 -
Vra10g0680 856 MobiDBLite consensus disorder prediction 810 856 - -
Vra10g0680 856 MobiDBLite consensus disorder prediction 837 856 - -
Vra10g0680 856 ProSiteProfiles Protein kinase domain profile. 521 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0680 856 SUPERFAMILY Protein kinase-like (PK-like) 499 793 IPR011009 -
Vra10g0680 856 Gene3D - 221 404 - -
Vra10g0680 856 Gene3D - 28 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0680 Vra-Chr10 12872573 12876035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0680 10 837 Receptor kinase-like Gene Family AT1G30570 64.029 0.0 1114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra10g0680 Malectin_like 2.7e-31 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0680 - - gmx:100791403 1474.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0680 10 12872573 12876035 Vra10g0680 10 12872573 12876035 ECH
Vra10g0680 10 12872573 12876035 Vra8g1594 8 32967883 32971156 PCT