Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0678 ATGGCTAACTATTCCCATCCTCATATCTGCCAATGTCTGAGCCGCTTGCTTGGCTTCCGGCGACATTTTCCGGTCACTGTCACCGGAAACCGCCGCAAAACTGGCCAACAGTTGGTTGAAGAAGTGTTGTCTTTGGCCCAAGGCCTACTCCACCTTGGACTCGCACCTGGTCACGTGGTTGCCATGTCTGCTTACAATAGTGATAAGTATCTGGAATGGCTATTAGCCGTTGCATTTGTTGGAGGAATAGCTGCTCCTCTGAACTATAGATGGAGTTTTGAAGAGACAAGATTAGCATTGGCTGCAGTGAAGCCAGTGTTACTAGTGACTGACGAGAGCAGTGCCACATGGTACTCAAAACTCCAGCAAAATGATATTCCATCTCTGAAGTGGCATATTTTGTTGGATTCCGCTTCCTTAGATTTTACTAAGTGGAATGTGTTAACTCCAGAAATGATTAAGAGGCATCCTGTAAAGCTTGAACCATTTGACTACTCATGGGCACCTGAAGGCACTGTCATAATATGCTTTACTTCAGGAACTACGGGAAAGCCTAAGGGAGTCACTCTAAGTCATGGAGCTTTGATCATACAATCCTTAGCCAAGATTGCCATAGTTGGCTACAATGAGGATGATGTCTATCTGCATACTGCTCCGTTATGCCATATTGGTGGCTTGTCGTCAGCAATGACCATGCTTATGGTTGGAGGCTGTCATGTCCTGATGCCAAAGTTTGATGCAGAATCAGCTGTTGGTGCCATAGAGCAATATGCAGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAATTAGGCCCAAAGAGATTTGGAAAGGAGGAGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACATGAGCTCATCAAGGACAGTAGCATATTCTTTCACAAAGCTAAACTTATTTCAGCTTATGGAATGACAGAGACCTGCTCTTCATTAACATTCCTGATGCTGTGTGATCCGGTGGATGAAAAGACAACCATGTCCCTTCAAACATTTGGTGTGGCAAGATCCAAGTTTATTCAGCAGCCACAAGGTATCTGTGTTGGCAAGCCTGCACCCCATGTAGAACTGAAGATAAGTGCAGATGCTTCTGGTCTAATTGGAAGAATTCTAACAAGAGGACCACATATAATGCTTAGGTATTGGGAAACTCACACAAACCCATTAAGCCCGAACAATGAAGCCTGGCTTGACACAGGTGATATTGGATCAATTGATCATTATGGTAACTTGTGGCTTCTTGGTCGAACAAATGGTCGAATCAAGAGTGGTGGGGAGAATATTTACCCTGAAGAGGTTGAGGCAATTATACTACAGCATCCAGGGATTACAAGTGTTGTTGTTGTGGGAATCCCAGATGCTCACCTAACAGAGATGGTAGCAGCATGTATCCAACTTAGAGAAAATTGGCAATGGTCAGAGCAATTGACTGTTTCAAATGAAGAGTTTAACCTATCTAGAAAGAATCTCCAGCTATATTGTATAGAAAATCATTTAAGCAGGTTTAAGATACCAAAAATGTTTATTGCATGGAAAAAGCCATTTCCACTGACTACAACAGGGAAAATAAGAAGAGATCAAGTCAGAAAGGAAGTTATGTCTCAGCTACAATCTTTGCATAGTAATCTTTGA 1680 0.4274 MANYSHPHICQCLSRLLGFRRHFPVTVTGNRRKTGQQLVEEVLSLAQGLLHLGLAPGHVVAMSAYNSDKYLEWLLAVAFVGGIAAPLNYRWSFEETRLALAAVKPVLLVTDESSATWYSKLQQNDIPSLKWHILLDSASLDFTKWNVLTPEMIKRHPVKLEPFDYSWAPEGTVIICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYNEDDVYLHTAPLCHIGGLSSAMTMLMVGGCHVLMPKFDAESAVGAIEQYAVTSFITVPAIMASLISVIRPKEIWKGGETVKKILNGGGSLSHELIKDSSIFFHKAKLISAYGMTETCSSLTFLMLCDPVDEKTTMSLQTFGVARSKFIQQPQGICVGKPAPHVELKISADASGLIGRILTRGPHIMLRYWETHTNPLSPNNEAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAIILQHPGITSVVVVGIPDAHLTEMVAACIQLRENWQWSEQLTVSNEEFNLSRKNLQLYCIENHLSRFKIPKMFIAWKKPFPLTTTGKIRRDQVRKEVMSQLQSLHSNL* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0678 559 Gene3D - 435 552 IPR045851 -
Vra10g0678 559 PANTHER ACYL-COA SYNTHETASE FAMILY MEMBER 2, MITOCHONDRIAL 6 550 - -
Vra10g0678 559 Pfam AMP-binding enzyme 27 439 IPR000873 -
Vra10g0678 559 Pfam AMP-binding enzyme C-terminal domain 448 538 IPR025110 -
Vra10g0678 559 ProSitePatterns Putative AMP-binding domain signature. 175 186 IPR020845 -
Vra10g0678 559 SUPERFAMILY Acetyl-CoA synthetase-like 8 553 - -
Vra10g0678 559 CDD AFD_class_I 175 540 - -
Vra10g0678 559 PANTHER ACYL-COA SYNTHETASE 6 550 - -
Vra10g0678 559 Gene3D - 9 432 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0678 Vra-Chr10 12843828 12850191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0678 42 554 Monolignol Biosynthesis Gene Families AT4G19010 26.642 6.10e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0678 K14760 - gmx:100809925 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0678 10 12843828 12850191 Vra10g0678 10 12843828 12850191 ECH