Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0677 ATGGAACTTGGAAGACCTGCCTCAAGTAGAAGAAAATTGAAAGATTTATTGCTTAAAAAAGATAATCGTAATTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTGTATGCTTAAAATGTTGTGGAGTGCACAGAAGCCTCGGTACTCATATATCAAAGGTATTGTCTGTGACATTGGATGACTGGTCAGAAGATGAAATAGATGCAATGATGGAGGTTGGGGGAAATGCTTCTGCTAATTCAATATACGAAGCTTATATTCCTGATGGAGTTACAAAACCCGGACCAGATGCTGGTCATGAGCAGCGTTCAAACTTTATAAGGTCAAAGTATGAATTTCAAGAATTTCTGAAACCGAGTTTGCGCATTATATCTGGAAAAAGCAGTCTAGAATCAAGTTCTACAAAGAGTGCTATTGATAGTTTTAGAAGTACTAGTGGTACAGAGAGACAGGAAGGTATGGTAGAATTTATTGGACTGTTGAAGGTGAAAGTAATTAAAGGCACAGATTTGGCTATCAGGGACATAAAGTCAAGTGATCCGTATGTCATTTTGAGCCTTGGCCAGCAGAAAGTATTTGATCATGACACATTTTCCTCTGATGATATTATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTTATTGAGGATAGCACAGTCAATATTATTGATGGTAAGGTTAAACAAATGATGTCACTAAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAG 876 0.3824 MELGRPASSRRKLKDLLLKKDNRNCADCNAPDPKWASANIGVFVCLKCCGVHRSLGTHISKVLSVTLDDWSEDEIDAMMEVGGNASANSIYEAYIPDGVTKPGPDAGHEQRSNFIRSKYEFQEFLKPSLRIISGKSSLESSSTKSAIDSFRSTSGTERQEGMVEFIGLLKVKVIKGTDLAIRDIKSSDPYVILSLGQQKVFDHDTFSSDDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVNIIDGKVKQMMSLKLQNVESGELDLELEWIPLDQ* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0677 291 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 200 - -
Vra10g0677 291 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 199 291 - -
Vra10g0677 291 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 124 IPR001164 GO:0005096
Vra10g0677 291 Pfam C2 domain 167 199 IPR000008 -
Vra10g0677 291 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 199 291 IPR044518 GO:0005096|GO:0005543
Vra10g0677 291 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 200 IPR044518 GO:0005096|GO:0005543
Vra10g0677 291 CDD ArfGap 22 119 - -
Vra10g0677 291 Gene3D C2 domain 153 199 IPR035892 -
Vra10g0677 291 SMART arf_gap_3 11 132 IPR001164 GO:0005096
Vra10g0677 291 Gene3D Arf GTPase activating protein 4 130 IPR038508 -
Vra10g0677 291 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Vra10g0677 291 Gene3D C2 domain 200 291 IPR035892 -
Vra10g0677 291 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vra10g0677 291 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vra10g0677 291 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vra10g0677 291 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Vra10g0677 291 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 288 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0677 Vra-Chr10 12835279 12842760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0677 3 291 C2H2 Transcription Factor Family AT4G21160 64.848 6.91e-157 439
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0677 10 12835279 12842760 Vra10g0677 10 12835279 12842760 ECH