Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0664 ATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCGGCCAAGAAGGAATCATGCAAGTCAAAGTCAAAGATGAACCGTAGTGAATCGGAATGGGCCTTTCAGCAGTTTCTTCAGGAAGCAGTTTCTCCTTCTTCATCTTCTTCCTCCGACGTTAAACCCAAAAACGATCCCGACATCAACATGAACATCCCTGTTACTCTAAATGTCGATTCCCACGATTACCAAACCATTCTTAAAACCAAGCTTAACCTCGCTTGTGCCGCTGTCGCTTTGTCTCGGGGATCTTTGGTCAAATCTCAAAATCCGACAACTTTCCCTGATAGTGGATCACAGGCATCTGTTCCTTCTGAAGTTGGAACCTTGAAAGATTCCCTGCAAAAGAAAGCTGGTGTTGCAGTGAGGCCAACATTAAGTGCATCATCAAGAGAGCAATCAGATGATGAGGAAGCGGAGGAAGAGATTAACATGAGTGGAAAAATGAATACAACTGATGCAAAACGAGTAAGGAGGATGCTTTCTAACAGGGAGTCTGCTAGACGCTCAAGGAGAAGAAAGCAGGCTCATTTAACTGAGCTGGAGACACAGGTCTCCCAATTAAGAGGTGAAAATTCTTCCTTGTTAAAGCGCTTAACTGACGTGAATCAGAGATACAACAGTGCTGCAGTGGACAACAGAGTATTGAAAGCTGATGTTGAAACGTTAAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATATCTGGGTTGAATCCAATGTTTCATGGCATGAGTGAGATGTCAGCAATGGAAATAGCAATGTTTGATGAAAGTCGTTCTGAGACATCAGGTGGTGGTGCTGTTCCTGTGCAAGAAGACCCAAATCATAAACTTTGTGAAGCCAAGAATGGATTGGGAGGCATTTGTTCAGTGAAAAGTGTGCAGCAGAAGGTTACAACAGTGGTAGGTTGGGGAGGAAATTCCCTGCATAGAGTTGCTAGCTTGGAACATCTTCAGAAGCGAATTCGTGGTGATGAAGATTCACGTGGAGACCAATAA 1056 0.4394 MERVLSVDEISEQYWVAAKKESCKSKSKMNRSESEWAFQQFLQEAVSPSSSSSSDVKPKNDPDINMNIPVTLNVDSHDYQTILKTKLNLACAAVALSRGSLVKSQNPTTFPDSGSQASVPSEVGTLKDSLQKKAGVAVRPTLSASSREQSDDEEAEEEINMSGKMNTTDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLLKRLTDVNQRYNSAAVDNRVLKADVETLRAKVKMAEETVKRISGLNPMFHGMSEMSAMEIAMFDESRSETSGGGAVPVQEDPNHKLCEAKNGLGGICSVKSVQQKVTTVVGWGGNSLHRVASLEHLQKRIRGDEDSRGDQ* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0664 351 MobiDBLite consensus disorder prediction 103 192 - -
Vra10g0664 351 Coils Coil 180 214 - -
Vra10g0664 351 Gene3D - 170 225 - -
Vra10g0664 351 PANTHER BASIC LEUCINE ZIPPER 63 1 347 - -
Vra10g0664 351 PANTHER BASIC LEUCINE ZIPPER 63 1 347 - -
Vra10g0664 351 MobiDBLite consensus disorder prediction 44 63 - -
Vra10g0664 351 Pfam bZIP transcription factor 170 222 IPR004827 GO:0003700|GO:0006355
Vra10g0664 351 SMART brlzneu 167 231 IPR004827 GO:0003700|GO:0006355
Vra10g0664 351 SUPERFAMILY Leucine zipper domain 171 221 IPR046347 GO:0003700|GO:0006355
Vra10g0664 351 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 169 223 IPR004827 GO:0003700|GO:0006355
Vra10g0664 351 Pfam Basic leucine-zipper C terminal 238 344 IPR020983 -
Vra10g0664 351 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 174 189 IPR004827 GO:0003700|GO:0006355
Vra10g0664 351 MobiDBLite consensus disorder prediction 103 125 - -
Vra10g0664 351 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0664 Vra-Chr10 12460328 12462574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0664 1 264 bZIP Transcription Factor Family AT4G02640 40.252 2.12e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra10g0664 bZIP_C 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0664 K25784 - gmx:778137 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0664 10 12460328 12462574 Vra10g0664 10 12460328 12462574 ECH
Vra10g0664 10 12460328 12462574 Vra8g1585 8 32908849 32915369 PCT