Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0660 ATGGAGTTTCCGCCGAACCTTTTGCCAGACGAAGCGAGCCCAGAATGGTTAAACAAAGGAGATAATGCGTGGCAGTTAATGGCAGCGACGGTGGTGGGTCTACAAAGCATTCCAGGGCTGGTTATTCTCTACGGAAGCCTCGTCAAAAAAACATGGGCCATTAACTCCGCTTTCATGGCCTTCTACGCCTTCGCGGCGGTTCTTCTCTGCTGGGTTGCGTGGGGTTTCCGCATGTCATTCGGTGAGAAAATGCTGTTCTTCTTGGGGAAACCAGGGGTGGCGCTGGACCAGGAGTTTCTTCTGGGGAAAGCGTTTCTGGGGCTCTTTCCCACCGCTACCATGGTGTTTTTTCAGGGCGTGTTCGCGGCGATTACTTTGATCCTCATAGCTGGGGCGTTGCTCGGGAGAATGAACATCCTTGCGTGGATGCTGTTTGTTCCTCTTTGGGTTACTTTTTCGTACACGGTCACTGCTTTCAGCATCTGGTGCCCCGAAGGATGGTTGGCGAAGCTTGGAGTTATTGATTTCTCCGGTGGATATGTCATTCACCTCTCTGCCGGAGTTGCCGGTTATACTGCAGCTTATTGGGTGGGTCCAAGATGTGAGAAGGAGAGAGAAAGGTTTCCATCAAACAACATGATTGTAGGGCTCGCCGGCGCCGGCCTGCTTTGGATGGGTTGGAGTGGGTTCAACGGTGGTGGTCCGTTCGTGGTGAGCACGGTGGCTTCTCTGGCCGTCCTTAACACACACGTGTGTGCCGCCGCTAGCATCATGGTGTGGGTTCTACTCGACACTTTGTACTTTGGTAAGCCCACCGTGTTTGGCGCCATACAAGGCATGATCACCGGCCTCGTTTGCATCACACCTGCTGCAGGAGTTGTGCAGGGGTGGGCAGCGATCTTGATGGGTTTGATCTCAGGAAGCGTTCCCTGGTACACAATGATGATCCTCCATAACAAGGTACCCTTCTTGAAACAAATCGACGACCCCATGGCGGTTTTCCACACCCACGCCGTCGCCGGTGCTCTCGGCGGAATCCTCACCGGCCTCTTCGCCGTCCCTAAACTCTGCCGTCTCTTCTACATGGTCCCCGATTGGGAAAAATACATTGGCCTGGCCTATGGCCTCCAGAACGGTGCAACTGGAGCGGGTTTAAGACAAATGGGCATCCAAATCGGAGCCATAGTTTTCGTCATCATCTTCAACTTCGTTACTACAAGCTTGATTTGCTTGCTGGTGGGGGTCTTGGTACCTCTCAGACTTCACACCGATGCGCTGCAAACGGGTGACAAGGCAATGCATGGAGAAGAGGCTTTCGCTTTGAATAATGCTGACAATGCCAAGTTTGAGAATCTCAACCACAACAGAATTTATGATACTCAAGACTTTTCCTTCTTTAGAGACCCAAAACCATTGACTCAACTTCAAATGGTATGA 1437 0.5198 MEFPPNLLPDEASPEWLNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWGFRMSFGEKMLFFLGKPGVALDQEFLLGKAFLGLFPTATMVFFQGVFAAITLILIAGALLGRMNILAWMLFVPLWVTFSYTVTAFSIWCPEGWLAKLGVIDFSGGYVIHLSAGVAGYTAAYWVGPRCEKERERFPSNNMIVGLAGAGLLWMGWSGFNGGGPFVVSTVASLAVLNTHVCAAASIMVWVLLDTLYFGKPTVFGAIQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMILHNKVPFLKQIDDPMAVFHTHAVAGALGGILTGLFAVPKLCRLFYMVPDWEKYIGLAYGLQNGATGAGLRQMGIQIGAIVFVIIFNFVTTSLICLLVGVLVPLRLHTDALQTGDKAMHGEEAFALNNADNAKFENLNHNRIYDTQDFSFFRDPKPLTQLQMV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0660 478 TIGRFAM amt: ammonium transporter 21 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vra10g0660 478 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vra10g0660 478 ProSitePatterns Sodium:solute symporter family signature 2. 265 285 IPR018212 -
Vra10g0660 478 Gene3D Ammonium transporter AmtB like domains 8 457 IPR029020 -
Vra10g0660 478 PANTHER AMMONIUM TRANSPORTER 1 478 - -
Vra10g0660 478 SUPERFAMILY Ammonium transporter 16 421 - -
Vra10g0660 478 PANTHER AMMONIUM TRANSPORTER MEP2 1 478 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vra10g0660 478 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005887
Vra10g0660 478 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005887
Vra10g0660 478 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005887
Vra10g0660 478 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0660 Vra-Chr10 12426699 12428337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0660 112 462 Inorganic Solute Cotransporters AT2G38290 54.986 2.46e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0660 K03320 - gmx:100782944 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0660 10 12426699 12428337 Vra10g0660 10 12426699 12428337 ECH