Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0653 ATGGAGAATCCGGGACTATCTTGTGGCGATAAAACTCCACAGGAATTTTTCAAAGTTTTTCTTACACGCAGAGGTTCTACCCAGTTGCAAATACCAAGATCTTTCACTAAGTTTTTCACTGGAATCCCACCATGTAAGGTCGTTCTTGTAGAACAGGATGGAAAACATTGGGATGTTAAGGTGGAAATAATCGAAGGTGGTTTGGTTTTTAAAAGTGGGTGGCAGGAATTTGCCAAGGAGAAAAAATTGGAAGATTGCGACTTTTTGGTTTTTGAGTATGATGGTAAAACTACTTTTAATGTGAAGATATTTGGGAAAACTGGGTGCAGGAAAGTGGCTGCACCTCCAAAAGTTGTTCCCATTGTGAATTTGGAAGAAGATTCTGATGAACATAGTAATGAAATCCAGAACAATGGTGTACGGAAACGTCCACTCCCAAGTTCCAAAACAAATGTGAAATCAGAAGGTGCATGTCCATTCAAAGGAGCTCAGCACAGATCAAAAAGAATAAAGGAAGGAAAAGATAAAATGAATGACGAGAAACCTGGGCTTACAAAGCATGTTCCATTGGAGAATGGTCATTTTCAAATATGTTTTGATTCTGAATATAAACTAAAAAGAGTGGAATTTCCTAGAAAAATGCTTAAAATGAATATCAAGCTGCTTCGGAGTATAACTCTCAGGGACGAGAATGGCAAGTCATGGCCGGTGACGGTCAATTTCACATTGGATTATCATCGTAGATATTTGGGAAGTGGATGGATGGCTTTCAGGGAGAGTAAAAACATTCAACTAGGGTCTCGATGTGATTTTCAGTTTGTTGTCGACAAAGCAAATGTGGCCAGAGAACTGCTTGTGCGCGTGCTTTCGAAGATAAAGAACAAATAG 888 0.3919 MENPGLSCGDKTPQEFFKVFLTRRGSTQLQIPRSFTKFFTGIPPCKVVLVEQDGKHWDVKVEIIEGGLVFKSGWQEFAKEKKLEDCDFLVFEYDGKTTFNVKIFGKTGCRKVAAPPKVVPIVNLEEDSDEHSNEIQNNGVRKRPLPSSKTNVKSEGACPFKGAQHRSKRIKEGKDKMNDEKPGLTKHVPLENGHFQICFDSEYKLKRVEFPRKMLKMNIKLLRSITLRDENGKSWPVTVNFTLDYHRRYLGSGWMAFRESKNIQLGSRCDFQFVVDKANVARELLVRVLSKIKNK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0653 295 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Vra10g0653 295 SUPERFAMILY DNA-binding pseudobarrel domain 204 274 IPR015300 -
Vra10g0653 295 SMART B3_2 195 292 IPR003340 GO:0003677
Vra10g0653 295 SMART B3_2 16 107 IPR003340 GO:0003677
Vra10g0653 295 CDD B3_DNA 16 104 IPR003340 GO:0003677
Vra10g0653 295 PANTHER B3 DOMAIN-CONTAINING 9 279 - -
Vra10g0653 295 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Vra10g0653 295 Pfam B3 DNA binding domain 201 289 IPR003340 GO:0003677
Vra10g0653 295 ProSiteProfiles B3 DNA-binding domain profile. 223 292 IPR003340 GO:0003677
Vra10g0653 295 Gene3D - 189 289 IPR015300 -
Vra10g0653 295 Gene3D - 7 109 IPR015300 -
Vra10g0653 295 SUPERFAMILY DNA-binding pseudobarrel domain 15 109 IPR015300 -
Vra10g0653 295 MobiDBLite consensus disorder prediction 138 154 - -
Vra10g0653 295 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 9 279 - -
Vra10g0653 295 CDD B3_DNA 200 275 IPR003340 GO:0003677
Vra10g0653 295 MobiDBLite consensus disorder prediction 127 186 - -
Vra10g0653 295 MobiDBLite consensus disorder prediction 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0653 Vra-Chr10 12380659 12382691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0653 15 290 B3 DNA Binding Superfamily AT5G66980 28.065 4.06e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra10g0653 B3 1.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0653 - - var:108345771 510.375