Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0650 ATGGGAAAAGCCAGCAAATGGATCAGAAACTTCCTTCTGGGGAAAAAAGATGAGAAAATCAAGAAGATCGATGCATTATGCTCTGAGGATATTAAGAGTCCTAACACGGGGAGTCTGATTGTGAGTCCCAAAGTGAAGCGCAGATGGAGCTTTGGAAAACTGACAGGTGGAAGAATAACAAGCAAGATAGTAGGGCATAAACTTTCCAGGTCTTTTGACTCAGGTGAGTCTGCAAAACTGCAAATACAAGCCTTGTTGGAAACAAAGGCTTCAAGGCGTCTTCCAACACCACTGCCAAGAACTTATAAAGATAAAAACAAAGCTGCTACAAAGATTCAGGCTGGTTTTCGCTCATATTTGGCAAGAAGAGCATTGCATGCTTTAAGGGGATTAGTAAAGTTACAAGCACTAGTGAGGGGTCACCTTGTGAGGAAACAAACAACTGCTACCCTGCGTGGCATGCATGCGCTGATGGCCATACAAGTTAGAGCGCGAATTCACAGAATTCAAATGGCAGAGGAAGTAAACCTCCTTGGAAAACAGCCTCCACAACATAGAGAAGTTGCACACTTCAGAGACCTAATAACAGAAGAAAATAAAGTAAGATTCAGACTCTGCAATGGACCTCAATTTAATCATCTGAAGTTTGACATCATATGA 660 0.4212 MGKASKWIRNFLLGKKDEKIKKIDALCSEDIKSPNTGSLIVSPKVKRRWSFGKLTGGRITSKIVGHKLSRSFDSGESAKLQIQALLETKASRRLPTPLPRTYKDKNKAATKIQAGFRSYLARRALHALRGLVKLQALVRGHLVRKQTTATLRGMHALMAIQVRARIHRIQMAEEVNLLGKQPPQHREVAHFRDLITEENKVRFRLCNGPQFNHLKFDII* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0650 219 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Vra10g0650 219 SMART iq_5 104 126 IPR000048 GO:0005515
Vra10g0650 219 SMART iq_5 127 148 IPR000048 GO:0005515
Vra10g0650 219 PANTHER IQ-DOMAIN 5-RELATED 1 200 - -
Vra10g0650 219 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Vra10g0650 219 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Vra10g0650 219 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Vra10g0650 219 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 200 - -
Vra10g0650 219 Gene3D - 104 147 - -
Vra10g0650 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 147 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0650 Vra-Chr10 12356929 12358256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0650 1 171 IQD Protein Family AT4G14750 42.857 2.71e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0650 - - vra:106774838 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0650 10 12356929 12358256 Vra10g0650 10 12356929 12358256 ECH