Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0648 ATGTTGTATCCTTATTGCATGTACAATGAGAAAGGGAGAAAGTTTTGCCTTCAAGCTTATGTGCTTTTTAAGGAACTTCCTCTGGCATTTTGGTTAAATTCCTTCCGGAGAGAGGGAAATCTGTTGCTAACTGATAACATGGAGCAGTATGAAGTGCTTGAACAAATTGGAAAAGGCGCTTTCGGTTCTGCTCTTCTTGTCAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAACGCTCTCGTAGGTCTGCTCACCTGGAGATGGATCTCCTCTCCAAATTAAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTGGTGGTGTTATGTTCCCTGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTCGTCGGAACTCCTAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGGCCCTGATTAACAAAATTAACAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAACCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATGGCCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCAAGAATCCAACTACATGAAGAAAGCTAGATTTCCGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGGAATAAGTGGCATTCTATTAGCAATGATAGGACCTTAAATCCCAATGTATCAGGAGCGGAGGTAGAGTCTCTATGCTCTACGCTAGAAATAGACTGTACTCCTGATAATATAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAATCACGATTTGAAGTCACAGCATAAGTCGGCTGTTTCGAGAACTTCTAGTAATGTCAGGACTCCTCGGTTAACTGCATCAAAAGCTTCTGCCAGCCCCAAGAAATCAATGCTATCCTCAAAGAATTATAAGACGCTTCCTGTTTCACACAACATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTTCCACGAAGTTGTGCCATTCAGCTGCCTCCCTGCAGGTCCAGTACTGGTTTACTTTGCCATGTAACTTCTCCAAATATTTCAGTCAACTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGTCACAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCGACATTGGTAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTACGCCAGGGTGTACATATGCTTGGCAGGGAATCAAGCGCAGCATGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAAAAGCTGGAGGGTCAAGCCACAACTCTTCGGACTTGCACTGCCGGCAGTTTGATACATCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTACTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGAGTTTTATTAAAACCGTTTGGACCAGGGAAAGCTTCACCAAGAGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCCGAGAACAATCCACTTAA 2004 0.4227 MLYPYCMYNEKGRKFCLQAYVLFKELPLAFWLNSFRREGNLLLTDNMEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMDLLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAGGVMFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHLKINGPRRSTLPGLWQESNYMKKARFPKSEDDRVSVSGNKWHSISNDRTLNPNVSGAEVESLCSTLEIDCTPDNINQRFAKLSIGDNHDLKSQHKSAVSRTSSNVRTPRLTASKASASPKKSMLSSKNYKTLPVSHNMKQPVHTTRRASLPFPRSCAIQLPPCRSSTGLLCHVTSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSSQGSSGSPPCGNDSTLVDKCTIKVCDTSYVTPGCTYAWQGIKRSMLKKNNEDKSGSSDQNAKAGGSSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0648 667 Pfam Protein kinase domain 50 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0648 667 MobiDBLite consensus disorder prediction 578 594 - -
Vra10g0648 667 ProSiteProfiles Protein kinase domain profile. 50 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0648 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vra10g0648 667 CDD STKc_Nek 49 304 - -
Vra10g0648 667 MobiDBLite consensus disorder prediction 402 438 - -
Vra10g0648 667 MobiDBLite consensus disorder prediction 570 594 - -
Vra10g0648 667 Gene3D Phosphorylase Kinase; domain 1 33 129 - -
Vra10g0648 667 Gene3D Transferase(Phosphotransferase) domain 1 130 315 - -
Vra10g0648 667 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 47 652 - -
Vra10g0648 667 MobiDBLite consensus disorder prediction 408 438 - -
Vra10g0648 667 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Vra10g0648 667 SMART serkin_6 50 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0648 667 PANTHER SERINE/THREONINE-KINASE NEK4 47 652 - -
Vra10g0648 667 SUPERFAMILY Protein kinase-like (PK-like) 47 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0648 Vra-Chr10 12349750 12356738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0648 56 305 MAP Kinase Kinase Kinase AT1G53570 31.765 3.84e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vra10g0648 Pkinase 2.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0648 K08857 - gmx:100796019 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0648 10 12349750 12356738 Vra10g0648 10 12349750 12356738 ECH
Vra10g0648 10 12349750 12356738 Vra8g1580 8 32852439 32860625 PCT