Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0647 ATGTTCGATGGAATATCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTCACTTGTCTTTCCCTCTTCATGCCTCTTCAACTTCCCCAACTACCTTCTTACCCTTTGATCCCTATAACCCTACTTCTCAATCTCAACAACACCATTTCCCACTCCAAACCAATCTCTTCCACCCATTGCACCCTCCTTCTCCTCCTACCCACAAACACAAGCTTCCTTCAATCCACCTAACCGATGATTCCTGGTCCAACGATGAACTCCTTGCACTTTTCAGAATCAGATCTACCATGGAAAATTGCTTCCCGGAGCACACATGGGACCATGTCTCCAGGAAGCTGGGAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTGGATATTTCGACAACGTTAGTAACTACGGCAAGAACAATTACCGGTTCCTTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATTCGGCTGGTGGTGGCGGTGGCGATTGTGACGGTGATGATGGAATCGTGAGGAGTGAAAAGACCCTCCTCCACCTTGGAGCAGACAACATGGGCCATCGACAATGTGATGGAACAGATGACAAGGTTGTGGTGGAGAAGTCAAAGGAGCGAAAGAGGAAGAGACGTGACAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTTTTGTGAACAAGATGATGGCTCAACAGGAAGAGATTCACAACAGGCTCCTGGAGGACATGGTGAAAAGGGACCAAGAGAAGTTTGCCAGAGAGGAAGCATGGAAGAAGCAAGAGATGGAGAGGATGAACAAGGAGCTTGACATCATGGCACAGGAGCAAGCTATCGCCGGAGACAGACATGCTACCATAATTGAATTCTTAAAGAAATGTGCAACAACAACGTCAACAACAAGCCAAAATGCCAACGGTTCCAGTCTTCCAAATCGTTCACTATTGCACTCACTAAACCCTAATAGTCCTTCCAATGAAGATAACAACCTCGATCCAACACCAACGCTTCTGAATCATGATCAAACTAAGTTATTAAGAGCAGAAAACCCTAGTTCAAGTGAGACATTATTACAAGTTCCTTCTTCCTCCAACTCTTCCCCAACTCCCCACAACCCTAGTTCTTCCCTCAATAGCCAAAACAATACTATCCCATTAGAGTCAAATTCAGTTTCGACGTACAAGACAACCTCAACAACCCCACCAGGCAGAACTGAGAATTCGAAAGATGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGCTAGCACTGATAAACCTGAGGTGCACGAGTGTAAGTAACAGTGAAGAAAAAGAAGGAAATAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGGTGGGATACAAGAGAAGCGCAAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACTAAGGATGTTAACAAGAAAAGGTCCCTTAATTCTAGGACCTGTCCTTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATTGTGGCAGCACAGTCGGAAAGAGAAGGAAACTACATGAGTCCAACCGCGAATTCCGGCCAAGTGCCACCGGATGTTGATGATGAAGATGAGTCTTCTCATGTGGGGTCTGGTGGTTTGGATCATTATGCATGTTAA 1686 0.4561 MFDGISDQFHQFIAPRTTLPLHLSFPLHASSTSPTTFLPFDPYNPTSQSQQHHFPLQTNLFHPLHPPSPPTHKHKLPSIHLTDDSWSNDELLALFRIRSTMENCFPEHTWDHVSRKLGELGFKKSAEKCKEKFEDESGYFDNVSNYGKNNYRFLSELEELCQNPDSAGGGGGDCDGDDGIVRSEKTLLHLGADNMGHRQCDGTDDKVVVEKSKERKRKRRDRFEMFKGFCESFVNKMMAQQEEIHNRLLEDMVKRDQEKFAREEAWKKQEMERMNKELDIMAQEQAIAGDRHATIIEFLKKCATTTSTTSQNANGSSLPNRSLLHSLNPNSPSNEDNNLDPTPTLLNHDQTKLLRAENPSSSETLLQVPSSSNSSPTPHNPSSSLNSQNNTIPLESNSVSTYKTTSTTPPGRTENSKDDVGRRWPRDEVLALINLRCTSVSNSEEKEGNNKGPLWERISQGMSEVGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVAAQSEREGNYMSPTANSGQVPPDVDDEDESSHVGSGGLDHYAC* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0647 561 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 552 - -
Vra10g0647 561 MobiDBLite consensus disorder prediction 358 414 - -
Vra10g0647 561 SMART sant 420 484 IPR001005 -
Vra10g0647 561 SMART sant 82 139 IPR001005 -
Vra10g0647 561 CDD GT1 422 489 - -
Vra10g0647 561 MobiDBLite consensus disorder prediction 358 423 - -
Vra10g0647 561 ProSiteProfiles Myb-like domain profile. 78 137 IPR001005 -
Vra10g0647 561 Gene3D - 86 141 - -
Vra10g0647 561 Gene3D - 424 487 - -
Vra10g0647 561 MobiDBLite consensus disorder prediction 306 346 - -
Vra10g0647 561 Pfam Myb/SANT-like DNA-binding domain 422 508 IPR044822 -
Vra10g0647 561 Pfam Myb/SANT-like DNA-binding domain 84 148 IPR044822 -
Vra10g0647 561 MobiDBLite consensus disorder prediction 526 561 - -
Vra10g0647 561 PANTHER - 13 552 - -
Vra10g0647 561 MobiDBLite consensus disorder prediction 58 77 - -
Vra10g0647 561 ProSiteProfiles Myb-like domain profile. 423 482 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0647 Vra-Chr10 12338916 12341271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0647 223 514 Trihelix Transcription Factor Family AT5G28300 48.667 1.49e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra10g0647 Myb_DNA-bind_4 2.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0647 - - vra:106774627 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0647 10 12338916 12341271 Vra10g0647 10 12338916 12341271 ECH
Vra10g0647 10 12338916 12341271 Vra8g1579 8 32834050 32837118 PCT