Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0641 ATGAATGAACTTCAAACAGATTCCTCTGCCTCTTCGGAGTTCGTCGAAGTTGATCCAACTGGCAGATACGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAAGTCAAGTTGTATGATTTTCTGCAGAGCCCTGAAGATCTCGAGAGGCTTTACTGTGAAATTCATCTTCTCAAAACGCTGAAGCACAAAAACATAATGAAGTTTTACACGTCTTGGGTTGATACTGCTAATAGGAATATCAACTTTGTGACTGAAATGTTCACATCTGGCACCCTTAGGCAGTATAGACAAAAGCACAAAAGAGTTAACATTAGGGCTGTGAAGCATTGGTGTAGACAGATCCTGAGAGGGCTTCACTATCTTCATAGCCATGATCCACCTGTGATCCATAGAGATCTAAAATGTGATAATATTTTTGTGAATGGAAACCAAGGGGAAGTTAAGATTGGGGATCTTGGGTTGGCAGCAATTCTGCGCAAGTCTCATGCTGCTCATTGTGTAGGAACGCCTGAATTCATGGCACCAGAAGTTTATGAAGAATCCTATAACGAATTAGTTGACATATATTCCTTTGGAATGTGTGTGTTAGAAATGGTTACATTTGAATATCCTTATAGTGAATGTAGTCATCCAGCGCAAATCTACAAGAAAGTTATTTCTGGGAAGAAACCAGAAGCCTTGTATAAAGTGAAAGATCCAGAAGTGCGAGAATTTGTCGAGAAATGTCTGGCAACAGTGTCTCTAAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCAGATTGATGATTATGAGTATGATTTGGGGCCTGTGGAGAGTGGAGCATTTGATGGCAAGGGTCCTATTATCCATCAGCCATTTTTTAATCTTCACCGGAGCTACAGTAACATGAGTACTGAACACTCAAATTGCTTTGAATATGAAGGAGACTGGATTTCTCATCCGGCTGAGATTGAACCCAATGGAATTGAACTTTTCAAGTGCCATGATGATGATGAAGCGTCCGAAGAAGATGTTGACATAAGCATCAAGGGAAAGAAGAAAGATGATGGTGGAATTTTCCTGAGATTAAGAATTGCAGACAAAGAAGGACATATTCGAAATATTTATTTCCCATTTGACATAGAGATGGACACAGCATTAAGTGTAGCAACTGAAATGGTAGCAGAACTCGACATTACTGATCAGGATGTTACCAGCATAGCTGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAAACCAGGACCAGGAATTGAAGAACCTAACCATTTTGTAAACAATTTCTTTTGTCACAATTGTGTGTCTAACGATGCTTCTGGTGGGAATATTATGGATTTTCATTCACATAATCAAGTTGGAAAGAACTCTCAGCTTCCTCAATGCTGTAGGCATGGATGTACTTCGATGCATGGCCGGTTCGAGGAGATAACATTCCCATCTGAGTATGACAATCATGTTAGAGGGGACACAGTCACATCTATAGAATCAAACCAACCGGAGTGTCAGCAGTATCAGGAGCTATGGAATCATCAAGAAAGTTGTGAACTGAGTTCAGTAGAGTCTGATCAAAGCCATTCTGATGAGCAATATGAACAGTTAGATAAATCAGTATTGGCAGAAGACAAAGGAAAGGGTGTTTTGGAAAACAAGTTTGCACATGATCCAGGAAACCCCCCACCAAGTTTATCTGGGAATTATTTGTCTACTATCAGTTTGTTATGTCCTGGCTCAGGGAGTGAGTATGAGAAAGAGGTTCAACAAGAACTGAGATGGCTCAAAGCAAAACACCAAATGGAGTCAAGGGATCTCAGGGATAAAAGGTTTGGTGCAGCAGCCAAATCTTCTTCACATTCTAGTAACAAAGTCCACAAAACAGAACAAGGCATTGTGCTACCATTGACAGAAACAGTAAACGGAGTGAAAAATGGAATTCACTTGAAACCCCTGTGTAATTTCTGGGATTATGATTCCAGTTACCCTTCTCTAATCCAAAAGAGCCACTCCAATTTGGACATCCAAAGTCTCCAAAATTGTGAGGTGATGTGTTCTCACAAAGAAGGTATTATGGCTACTGCCAAGAGTTTTTACACAGGGTCACTTCGAGACACTCCATACAGAACAGTTTCCCTTCCCGTTGATGCTGTGGATATATAA 2232 0.4064 MNELQTDSSASSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCRQILRGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEESYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVISGKKPEALYKVKDPEVREFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLGPVESGAFDGKGPIIHQPFFNLHRSYSNMSTEHSNCFEYEGDWISHPAEIEPNGIELFKCHDDDEASEEDVDISIKGKKKDDGGIFLRLRIADKEGHIRNIYFPFDIEMDTALSVATEMVAELDITDQDVTSIADMIDGEIASLVPEWKPGPGIEEPNHFVNNFFCHNCVSNDASGGNIMDFHSHNQVGKNSQLPQCCRHGCTSMHGRFEEITFPSEYDNHVRGDTVTSIESNQPECQQYQELWNHQESCELSSVESDQSHSDEQYEQLDKSVLAEDKGKGVLENKFAHDPGNPPPSLSGNYLSTISLLCPGSGSEYEKEVQQELRWLKAKHQMESRDLRDKRFGAAAKSSSHSSNKVHKTEQGIVLPLTETVNGVKNGIHLKPLCNFWDYDSSYPSLIQKSHSNLDIQSLQNCEVMCSHKEGIMATAKSFYTGSLRDTPYRTVSLPVDAVDI* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0641 743 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0641 743 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 730 - -
Vra10g0641 743 CDD STKc_WNK 22 281 - -
Vra10g0641 743 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vra10g0641 743 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0641 743 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Vra10g0641 743 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vra10g0641 743 Gene3D - 373 439 - -
Vra10g0641 743 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0641 743 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 730 - -
Vra10g0641 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vra10g0641 743 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 376 430 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0641 Vra-Chr10 12275956 12279672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0641 1 502 MAP Kinase Kinase Kinase AT3G22420 56.987 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra10g0641 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0641 K08867 - gmx:100790554 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0641 10 12275956 12279672 Vra10g0641 10 12275956 12279672 ECH
Vra10g0641 10 12275956 12279672 Vra8g1571 8 32763897 32767621 PCT