Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0638 ATGGCATCTCAACAACACGATGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGAGTCCCAGGAGGACGAAGAGTTCGAAGAAGAGGACGACGTTTTGGCAGCCGACGATGAAGAAAACGAGTCCTCTCCCTCCACCGCTCTCGCCGTCACCGTCGCCGTCCCCGGTTCCGCCATCTCAAACGGTGGAGGCACGCCACTATCCACGCCCACCGCCACCACCATCGTCATCGGTGACTCCTCCGATCCGAAGCGGCGGCGCCTGGAGCCAATCGAGGAAAAGAAGCCTCCGCCGCCGCTGGACGACTCGCGGCGGCTGTTCCAGCGCCTGTGGACCGACGAGGACGAGATCGAGCTCCTTCAAGGGTTCCTGGACTACACCTCTCAGAGAGGATCCTCTCACCACAACGACACCGCTCTGTTCTATGACCAAATCAAGTCAAAACTCCAACTCGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAACAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCACACGATCAAGCCACCTTCGAAATCTCTCGCAAGATCTGGAGCAGCGTGGCTCCAGTCGGCGAAAATTCCTTGGACGACGACGAAATCAACCCTTGCCCCAACCCTAACCCTATCATCCCCCACCCTAACCTTAATTTTAGCCCCGTAATTCTCAAGAACGAAACGACTTCCAGGAATTCCACGGAGAAGAAAACACCGAAGCGCTCCCGGCCTCGATCGGCGGTGAAAGTCGAGCCAAACGATGGATCCGCGTCGAACAGAGATCTTAATTGTACTAGCAATGCTACGACTACGGCTACTCCTACTGCTACGGCTACGGCTACTAACACTACCGCTACTACTGCTACTACTAATAACAATTATAACAGTGGTTATAGCAATAACATACCGAGTTTGATTGAGGAGACGGTGAGGAGTTGTCTGTCGCCGGTGGTGAGGGAGTTGGTGGGAGCGATGGGAGGGGGAGCGTTTGGTGGGAGAGGAGTTTCCTTGAATTTAAACCCCATTCCTTTGATGAATTTGAGTTATGGTGGTGGAGAATTGGTGGATGAAAAATGGAGGAAGCAACAGATATTGGAATTAGAAGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCTGCGATGGAGGAGTTACGGTCCGGTGGAGGAGGAGGAGTTTGA 1236 0.5348 MASQQHDAVFREEDMDDDDESQEDEEFEEEDDVLAADDEENESSPSTALAVTVAVPGSAISNGGGTPLSTPTATTIVIGDSSDPKRRRLEPIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSSVAPVGENSLDDDEINPCPNPNPIIPHPNLNFSPVILKNETTSRNSTEKKTPKRSRPRSAVKVEPNDGSASNRDLNCTSNATTTATPTATATATNTTATTATTNNNYNSGYSNNIPSLIEETVRSCLSPVVRELVGAMGGGAFGGRGVSLNLNPIPLMNLSYGGGELVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSGGGGGV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0638 411 MobiDBLite consensus disorder prediction 1 104 - -
Vra10g0638 411 PANTHER BNAANNG10740D PROTEIN 1 407 - -
Vra10g0638 411 MobiDBLite consensus disorder prediction 81 104 - -
Vra10g0638 411 Coils Coil 156 176 - -
Vra10g0638 411 MobiDBLite consensus disorder prediction 12 39 - -
Vra10g0638 411 MobiDBLite consensus disorder prediction 62 79 - -
Vra10g0638 411 Pfam Protein of unknown function, DUF573 108 202 IPR007592 GO:0006355
Vra10g0638 411 Coils Coil 382 402 - -
Vra10g0638 411 MobiDBLite consensus disorder prediction 267 285 - -
Vra10g0638 411 MobiDBLite consensus disorder prediction 245 263 - -
Vra10g0638 411 PANTHER BNAANNG10740D PROTEIN-RELATED 1 407 IPR007592 GO:0006355
Vra10g0638 411 MobiDBLite consensus disorder prediction 242 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0638 Vra-Chr10 12256345 12258267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0638 43 410 GeBP Transcription Factor Family AT5G28040 45.088 4.16e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vra10g0638 DUF573 1.7e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0638 - - gmx:100790030 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0638 10 12256345 12258267 Vra8g1565 8 32727645 32728811 PCT